PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002657-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 441aa    MW: 48659.7 Da    PI: 6.2888
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002657-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011200222123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ Cgk+Fs+   L  H  +H
  AHYPO_002657-RA 200 YECKTCGKTFSSFQALGGHRASH 222
                      99**********99999998887 PP
2zf-C2H212.60.00041314336123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F++   L  H+r+H
  AHYPO_002657-RA 314 HECSICGSEFTSGQALGGHMRRH 336
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.92E-6198227No hitNo description
PfamPF139121.3E-12199224IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.593200227IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-4200222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.025200222IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280202222IPR007087Zinc finger, C2H2
SuperFamilySSF576671.84E-5311338No hitNo description
Gene3DG3DSA:3.30.160.607.5E-4312338IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.8E-11313338IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.429314341IPR007087Zinc finger, C2H2
SMARTSM003550.019314336IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280316336IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDGHDEVIDH NNYNNNYNNN ENQKKDIEKD IEGDVEGGGT QQSIVRGKRT KRQKPQSPIP  60
FRMIATTTNS GKSDQDSDIC SNNNMIEDNT TTAVTATTTT TTITIDSDRG DTNIFNNIVT  120
TKEEEEVAKC LILLAQSHPC PSQPIPIFSS GSGRSYNNNN NNNNSSNDNN NNNNNNGTKF  180
ISRKFMEAPS STGNFGYYVY ECKTCGKTFS SFQALGGHRA SHKKPKYNKD EDYNNKSKSN  240
QIYSNANSSR NTSRSNYNNF LLSSNDEDHS FKLARQDNNS NNNSTSLSLQ LTNRSSYSNC  300
ITNHQSNNKR SRVHECSICG SEFTSGQALG GHMRRHRGLV TNTLPIAATP LTIEQPSNDV  360
TQIPEDTMIN TTITMAPPTN IKRSNSALSV DLDLNLPAPS EDNVVDDHQK ESKSILQSNE  420
QSPSTQQVVL SSSSIVDCDY *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021767627.11e-109zinc finger protein ZAT5-like
TrEMBLA0A0K9Q9V46e-97A0A0K9Q9V4_SPIOL; Uncharacterized protein
STRINGXP_010684077.11e-101(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-36C2H2 family protein