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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AC199782.5_FGP003 |
| Common Name | TCP19, Zm.31339 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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| Family |
TCP |
| Protein Properties |
Length: 343aa MW: 35431.5 Da PI: 4.9412 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| AC199782.5_FGP003 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 99.4 | 6.6e-31 | 86 | 167 | 7 | 88 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88
r ++hTkv+gR+RR+R+ a caar+ L++ LG+++d++ti WLlqq +p+i+++tgt++ +a + + + + ++ ++
AC199782.5_FGP003 86 RYRDRHTKVEGRGRRIRMAAACAARVARLTRDLGHKSDGETIRWLLQQTEPSIIAATGTGTVPAIAITGTDGVLRLPAEPAS 167
678********************************************************88888444222222222211111 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MKGTPNEGQS DLSMESQAPG RGEEGTKALY LAPEVIGNGT AAGAVAVDAM VSVEAGGSGL 60
PKPEPVPVEF LGSGGLQLSK PRPAPRYRDR HTKVEGRGRR IRMAAACAAR VARLTRDLGH 120
KSDGETIRWL LQQTEPSIIA ATGTGTVPAI AITGTDGVLR LPAEPASEDA SGEQQEPAPK 180
RRRKLQPTRA AVGPAVPAPA AYYPVVADPR LQANGGGAIS VSSGLAPASA PAAPAGAIPF 240
IAIAAPRPSA AGDGKQMIPP AAMWMVPQQA GAGNQPTHYW AFTTNSEFLS YQQQSVFQQQ 300
VVYDGEQLVG DGESQGQQTG GYQHGDGEGV DEEIAVTDSS SEE
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269|PubMed:9338963}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ726827 | 0.0 | KJ726827.1 Zea mays clone pUT3366 TCP transcription factor (TCP19) mRNA, partial cds. |
