PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G00003
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Trihelix
Protein Properties Length: 246aa    MW: 28425.9 Da    PI: 8.4349
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G00003genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix591.2e-1818106273
    trihelix   2 WtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                 Wt +e+++Liea++ ++er  r++                   + +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r +
  AA53G00003  18 WTLNETMVLIEAKKMDDERRMRRSiglvpatdqpqdnrsskPGELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVE 106
                 *************97777777665556666666667776557899****************************************9843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8061091IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.3E-41392IPR009057Homeodomain-like
PfamPF138377.8E-1417106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSDVGGGLVM REYRKGNWTL NETMVLIEAK KMDDERRMRR SIGLVPATDQ PQDNRSSKPG  60
ELRWKWIEDY CWRKGCMRSQ NQCNDKWDNL MRDYKKVREY ERRRVESSFD PQESSSSTTL  120
KTPSYWKMEK SERKERSLPS NMLPQTYQAG EGGGAEEEET TMGAALWKSA SVIAEALKEN  180
EERQEKRHKE LLNLQERRLK IEESNAKMNK QGMDGLVEAI NKLATSIFTL ASSSSSSREQ  240
EQGAPP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G00003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478580.16e-77PREDICTED: putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X3
TrEMBLA0A087HS011e-78A0A087HS01_ARAAL; Uncharacterized protein
STRINGA0A087HS012e-79(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.17e-60Trihelix family protein