PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA33G00124

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bZIP

Protein Properties

Length: 323aa MW: 35604.8 Da PI: 9.3679

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA33G00124	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	73.3	3.5e-23	230	292	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++e+kr++rkq+NRe+A+rsR+RK+ae+e+L+e+v+ L++eN++L++el++l++e++klk e+ AA33G00124 230 DREIKRQKRKQSNRESAKRSRLRKQAECEQLQERVEGLTNENQELREELKKLSEEYEKLKEEN 292 689*********************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	1.2E-15	29	88	IPR012900	G-box binding protein, multifunctional mosaic region
Gene3D	G3DSA:1.20.5.170	1.8E-18	226	290	No hit	No description
SMART	SM00338	1.1E-20	230	294	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-21	231	292	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.794	232	295	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.88E-11	233	290	No hit	No description
CDD	cd14702	5.08E-21	235	285	No hit	No description
PROSITE pattern	PS00036	0	237	252	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MNIGSIPVII GYPWISSLSP LVFRSGFYAH LKLQAYPNPY FSSPVASPSP HPYMWGAQHH 60 MMPPYGTPLP YPTMYHHPSG VYPHPNMPMP LASTPGNTET VKDQASNKKS RERTKRKRHV 120 AEKSASGSGN NGVSQSDGSG TNSSSDENGT QQENGSSKKG SFDQMLADGN SQSKATTSVV 180 EGSVPMRPIA QGANLNMGMQ LWSPSAGTAA TTRPNTSIAV VPGQEQWMDD REIKRQKRKQ 240 SNRESAKRSR LRKQAECEQL QERVEGLTNE NQELREELKK LSEEYEKLKE ENSSIKDQLV 300 KACGSKAVVL VDNIEQSTVE SKE

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA33G00124

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010531172.1	1e-121	PREDICTED: G-box-binding factor 1 isoform X3
Swissprot	P42774	1e-104	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A0A1J3DZ24	1e-110	A0A1J3DZ24_NOCCA; G-box-binding factor 1
STRING	XP_010531169.1	1e-118	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7274	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.1	7e-88	G-box binding factor 1

Publications ? help Back to Top
Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]