PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00361
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bZIP
Protein Properties Length: 384aa    MW: 41911.4 Da    PI: 9.7805
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00361genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_174.81.2e-23256318163
                 XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN+aL++el++l+++++klk  +
  AA21G00361 256 ERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNDKSEKLKGAN 318
                 89*********************************************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.0E-29193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.3E-15128235No hitNo description
Gene3DG3DSA:1.20.5.1705.3E-19250316No hitNo description
PfamPF001705.4E-22256318IPR004827Basic-leucine zipper domain
SMARTSM003382.5E-21256320IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.357258321IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.0E-11259315No hitNo description
CDDcd147029.12E-21261310No hitNo description
PROSITE patternPS000360263278IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGNTEEAKTS KAEKSSSATD QTNVHVYPDW AAMQAYYGPR VPIPSYYNPS VTTSTHHPPP  60
PYMWNPQHMM TPYGAPYAAI YPHGGTVYPH PGIQMGSQLQ GQKVLASTAI PGMPLSIDTP  120
TKSTGNTDNG LMKKLKEFDG LAMSIGNDHS KNSLQEEHKR SRSSETEGST DGSDGNTTGA  180
DEPKLKRSRE GTPTTKDGKQ LVQSSSFQSV SVSQSSENGV KAVVGSIVSP GVSANSNPFK  240
SQSLAIAPPE TWLQNERELK RERRKQSNRE SARRSRLRKQ AETEELARKV EALTAENMAL  300
RSELNQLNDK SEKLKGANAT LLGKLKNSEG EESMEIEKKR VSSNLSTKKK NMENNESNNN  360
NNNSSNKLHQ LLDTKPRADA VAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272278RRSRLRK
2272279RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00361
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001323457.10.0G-box binding factor 3
RefseqNP_182150.10.0G-box binding factor 3
SwissprotP427760.0GBF3_ARATH; G-box-binding factor 3
TrEMBLA0A1J3J9U80.0A0A1J3J9U8_NOCCA; G-box-binding factor 3
STRINGAT2G46270.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-155G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  3. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]