PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA18G00178
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ARR-B
Protein Properties Length: 680aa    MW: 74828.9 Da    PI: 6.6842
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA18G00178genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.61.4e-28221274155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W+ eLH++Fv av+qL G ekA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  AA18G00178 221 KPRVVWSVELHQQFVAAVNQL-GVEKAVPKKILEMMNVPGLTRENVASHLQKYRI 274
                 79*******************.********************************7 PP
2Response_reg791.6e-26331411109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+   y +v+ +  +e al ll++++  +D+++ D+ mp+mdG++ll++i  e  +lp+i+++a ++++ +l+ +  Ga 
    AA18G00178  33 VLVVDDDPTCLMILEKMLRTCFY-RVTKCNRAEIALSLLRKNKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSKSVVLKGVTHGAV 127
                   89*****************9999.***************999999**********************6654.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +e+l +
    AA18G00178 128 DYLIKPVRIEALKN 141
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.1E-19211672IPR017053Response regulator B-type, plant
SuperFamilySSF521728.82E-3630162IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.2E-4130166No hitNo description
SMARTSM004481.4E-3031143IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.52332147IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.3E-2333141IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.49E-2834146No hitNo description
PROSITE profilePS5129411.047218277IPR017930Myb domain
SuperFamilySSF466891.11E-19218278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-29220279IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-24221274IPR006447Myb domain, plants
PfamPF002491.9E-8223273IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MMNPGLVRVP ESSSGRNLAG EVAPDQFPAG LRVLVVDDDP TCLMILEKML RTCFYRVTKC  60
NRAEIALSLL RKNKNGFDIV ISDVHMPDMD GFKLLEHIGL EMDLPVIMMS ADDSKSVVLK  120
GVTHGAVDYL IKPVRIEALK NIWQHVVRKK RNEWNVSEQS GSIEEISDRP QPQQRGPGTG  180
DEADNNSSSV NEGNWRGSRK RKEEEIDEQG DDKEDASTLK KPRVVWSVEL HQQFVAAVNQ  240
LGVEKAVPKK ILEMMNVPGL TRENVASHLQ KYRIYLRRLG GVSQHQGNLN HSFMTGQDPS  300
FGPLSTLNGF DIQALAVAGQ LPAQSLAQLQ AAGLGRPALS NSGAPLVDQR SIFSFDNPKI  360
RFGDGHDQSQ PRIQIPVNNN TKQMNMLHGV PTSIGQKQFT SLPQQQVSAV NSVNVQSSGM  420
LIPVANQQLQ QVSRGPTMVR SASLGHQPTL SNNISRRSEI PVSSRGLPGG YNMVTQHSTP  480
PIFNNFHSEL PRNSFPLASA PGISIPVSSS YQEEVNSSDR KGSSAVTASL GFGNPSYDVF  540
SDLQQHQNNK LNDWDLRSIG MVFNTHQDAA AAGSVAFSSS EVYSSSSSQR KRRHVDTVAE  600
HGQNHQQQPP LNQIYMDGGS SVRVKSERVA ETVTSPPEIT PFHEQYHQED LMSALLKQEG  660
IPSIDNEFDF DGYSIDNIPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-22220279463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA18G00178
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286049.20.0two-component response regulator ARR2
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLD7MA810.0D7MA81_ARALL; Two-component response regulator
STRINGCagra.0053s0018.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24032773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]