PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 903325
Common NameARALYDRAFT_903325
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 351aa    MW: 38921.8 Da    PI: 4.3638
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
903325genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-1781131155
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
             ++y+GVr++  +g+WvAeIr+p   g r +r +lg+f + +eAa a+++a+k+++g
  903325  81 CDYRGVRQRT-WGKWVAEIREP---G-RgARLWLGTFSSSYEAALAYDEAAKAIYG 131
             68*****999.**********8...4.45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.27E-3181140No hitNo description
PfamPF008474.9E-1381131IPR001471AP2/ERF domain
SMARTSM003804.6E-3682145IPR001471AP2/ERF domain
PROSITE profilePS5103220.91682139IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-1983139IPR016177DNA-binding domain
PRINTSPR003677.8E-98394IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2883140IPR001471AP2/ERF domain
PRINTSPR003677.8E-9105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGVLEHVANL ASMPFDSPRK RKSRGTRDVA EILRQWREYN EQTEADSCID GGVPKPVRNP  60
PPKGSRKGCM KGKGGPENGI CDYRGVRQRT WGKWVAEIRE PGRGARLWLG TFSSSYEAAL  120
AYDEAAKAIY GQSARLNLPE ITNRSSSTAA TVSGSVTAFS DESEVCARED TNERSGFGQV  180
KLEDCNDEYV LLDSSQCIKE ELKVKEEVME EHNSAVGFGI GQDPKREILD AWLMGNGNEQ  240
EPLEFGVDET FDINELLGIL DDNNVSGQET MQNQVDRQPN FSYQTQFQDA NLLGSLNPME  300
IAHPGVDYGY PYVQPSEMEN NGIDLDHHRF NDLDIQDLDF GGEKDVHGST *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1783139360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap903325
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0070200.0AC007020.5 Arabidopsis thaliana chromosome 2 clone T3G21 map g4514, complete sequence.
GenBankAF0852790.0AF085279.1 Arabidopsis thaliana ABA-regulated gene cluster, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881716.10.0dehydration-responsive element-binding protein 2C isoform X1
SwissprotQ8LFR20.0DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLD7LF310.0D7LF31_ARALL; Uncharacterized protein
STRINGscaffold_402826.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.10.0ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]