PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

899587

Common Name

ARALYDRAFT_899587

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NF-YB

Protein Properties

Length: 214aa MW: 24519 Da PI: 6.4165

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
899587	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	179.3	3.4e-56	29	124	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdrflPianv+rimkkvlP+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv+plkvyl kyr++egek 899587 29 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 124 89*******************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.8E-55	25	160	IPR009072	Histone-fold
SuperFamily	SSF47113	5.43E-42	31	162	IPR009072	Histone-fold
Pfam	PF00808	4.1E-28	34	98	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.3E-18	62	80	No hit	No description
PROSITE pattern	PS00685	0	65	81	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.3E-18	81	99	No hit	No description
PRINTS	PR00615	2.3E-18	100	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MTEESPEEDH GSPAETNPGS PSSKTNNNKE QDRFLPIANV GRIMKKVLPG NGKISKDAKE 60 TVQECVSEFI SFVTGEASDK CQREKRKTIN GDDIIWAITT LGFEDYVAPL KVYLCKYRDT 120 EGEKVNSPKQ QQQRQQQQQQ QQIQQQNHHN YQFQEQDQNN NNMSCTSYIS HHHPSPFLPV 180 DHQPFPNIAF SPKSLQKQFP QQQHDNNIDS IHW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-44	29	119	2	92	Transcription factor HapC (Eurofung)
4g92_B	1e-44	29	119	2	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	899587

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007063	0.0	AC007063.6 Arabidopsis thaliana chromosome 2 clone T10F5 map PR1, complete sequence.
GenBank	BT025276	0.0	BT025276.1 Arabidopsis thaliana At2g13570 mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBank	DQ446491	0.0	DQ446491.1 Arabidopsis thaliana clone pENTR221-At2g13570 CCAAT-box binding transcription factor (At2g13570) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002885881.1	1e-159	nuclear transcription factor Y subunit B-7
Swissprot	Q9SIT9	1e-135	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	D7L037	1e-157	D7L037_ARALL; Uncharacterized protein
STRING	scaffold_303557.1	1e-158	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	1e-126	nuclear factor Y, subunit B7

Link Out ? help Back to Top
Phytozome	899587
Entrez Gene	9319869

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]