PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 890145 | ||||||||
Common Name | ARALYDRAFT_890145 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 460aa MW: 51907.5 Da PI: 4.4828 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.5 | 1.1e-31 | 58 | 192 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkk.vegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkatgkd 89 lp+G++F+P+d e++++ L+k+ ++g + ++ e+i++v+ i++++P++Lp vk++ + +fF+k+ k+y+tg+rk+r+++ + +W++tg++ 890145 58 LPRGVKFDPSDPEIIWHLLAKSgLSGLSshpfID--EFIPTVNqddgICYTHPKNLP-GVKNDGTVSHFFHKAIKAYSTGTRKRRKIHdddfgDVRWHKTGRT 157 799************9999988444444644422..33444433345**********.778888999******************86555655889******* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+v+ +g + g+kk++v+y g+a kt+Wvmh+y+l 890145 158 KPVVL-DGVQRGCKKIMVLYGGKAV---KTNWVMHQYHL 192 *****.99************76665...6********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.02E-38 | 43 | 211 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.101 | 58 | 211 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-12 | 59 | 192 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MAGRSWLIDS NRIATKIMCA SASSDPRQVV WKSNPTRHCP NCQHVIDNSD VVDDWPGLPR 60 GVKFDPSDPE IIWHLLAKSG LSGLSSHPFI DEFIPTVNQD DGICYTHPKN LPGVKNDGTV 120 SHFFHKAIKA YSTGTRKRRK IHDDDFGDVR WHKTGRTKPV VLDGVQRGCK KIMVLYGGKA 180 VKTNWVMHQY HLGIEEDEKE GDYVVSKIFY QQPQQLVVKQ GDKVDQDVSE DIFAAMTPKA 240 DPVTPKLATP EPRHAVRICS DSHIASDYVT PHDYVTAHEV SLAETSEVMY MEDEVQSIQA 300 NHERLSSEYE PEPELEPEPE TGLENGAKEM IDDKEEQEKD RDDENQAEEE PTWFDNESQF 360 ILNSQQLVEA LSLCDDFLQV GSQDREENPN SGSLKNKQPC FADYADLGTE DFKRDLEECQ 420 KIVLDPSNIE LDTPPEFRLS QLEFGSQDSF LAWGTGKTD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 890145 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK221266 | 0.0 | AK221266.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-13-I20. | |||
GenBank | AK228316 | 0.0 | AK228316.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-74-M01. | |||
GenBank | BT010450 | 0.0 | BT010450.1 Arabidopsis thaliana At1g25580 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002890682.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | D7KQU3 | 0.0 | D7KQU3_ARALL; ANAC008 | ||||
STRING | scaffold_102939.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9707 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 0.0 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | 890145 |
Entrez Gene | 9326744 |