PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 888650
Common NameARALYDRAFT_888650
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 326aa    MW: 35794.4 Da    PI: 8.3441
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
888650genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-1755105155
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
             ++y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g
  888650  55 TRYRGVRRRP-WGRYAAEIRDPM----SkERRWLGTFDTAEQAACAYDSAARAFRG 105
             68********.**********84....35999*********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.4E-1055105IPR001471AP2/ERF domain
CDDcd000181.27E-2955114No hitNo description
SMARTSM003804.4E-3156119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-2956113IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-2156114IPR016177DNA-binding domain
PROSITE profilePS5103222.66956113IPR001471AP2/ERF domain
PRINTSPR003672.9E-95768IPR001471AP2/ERF domain
PRINTSPR003672.9E-97995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEEALRNFTE SSHSPDPNPF TKNFTDATAS PVSRNRKPSS KDTTVTIAGV GSSTTRYRGV  60
RRRPWGRYAA EIRDPMSKER RWLGTFDTAE QAACAYDSAA RAFRGAKART NFAYPTAVIM  120
PEPRFSFSTK KSLSSPRCPL PSLPLDLSTQ DFFGAPAAQR INTQSIFLRD ASCSSRKTTP  180
YNSFNVSSSS YSAPKTACFS SSDNENNESF FPEESSDSGL LQEVVQEFLK KNRGTPPPPT  240
PPPVTSHTHN SGDFSALTLY SDNMFQDTKE SLSSKLDRFG NFQANDSGYF DGVSAAADGG  300
SNEWGYQEML MYGTQLGCTC RRSWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-2049112771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates gene expression patterns in meristems and thus modulates organ development. Required for correct embryo patterning and cotyledon organogenesis. Modulates auxin signaling pathway in early embryos. Involved in the cytokinin signaling pathway that promotes shoot regeneration. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11752375, ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap888650
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:11752375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3535770.0AF353577.1 Arabidopsis thaliana enhancer of shoot regeneration ESR1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889978.10.0ethylene-responsive transcription factor ESR1
SwissprotQ9SAD40.0ESR1_ARATH; Ethylene-responsive transcription factor ESR1
TrEMBLD7KPE60.0D7KPE6_ARALL; Enhancer of shoot regeneration ESR1
STRINGscaffold_101444.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140721723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.11e-144ERF family protein
Publications ? help Back to Top
  1. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  2. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]
  3. Capua Y,Eshed Y
    Coordination of auxin-triggered leaf initiation by tomato LEAFLESS.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(12): p. 3246-3251
    [PMID:28270611]
  4. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  5. Luo L,Zeng J,Wu H,Tian Z,Zhao Z
    A Molecular Framework for Auxin-Controlled Homeostasis of Shoot Stem Cells in Arabidopsis.
    Mol Plant, 2018. 11(7): p. 899-913
    [PMID:29730265]