PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 880553
Common NameARALYDRAFT_679997
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MIKC_MADS
Protein Properties Length: 336aa    MW: 38182.6 Da    PI: 4.6843
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
880553genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.5e-27958150
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
            krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++++l  +s
  880553  9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFS 58
            79******************************************998776 PP
2K-box196e-08121191979
   K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
             + +++ e+l++e+ +L++++++ ++e+R++  + +   +++e +  e+qL + l+++ +++++l+ ++++ 
  880553 121 AINSDVEELEHEVCRLQQQLQMAEEELRRYEPDPVRFTTMEEYEVYEKQLLDTLTHVVQRRDHLMSNHLSS 191
             5567899************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.973161IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-28282IPR002100Transcription factor, MADS-box
CDDcd002654.73E-34275No hitNo description
PRINTSPR004049.9E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK  60
TRIEDVFTRF INLPKQERES ALYFSDQNRR PDIQNKECLL RILQQLKSEN DIALQLTNPA  120
AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPVRFTTM EEYEVYEKQL LDTLTHVVQR  180
RDHLMSNHLS SYEASTMQQS IGGPFVNDGV EGWLPENGPN QTHLFDASAH SNQLRELSSA  240
MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HGGVGPSIEE  300
MMPAQQGDIP AVTAEAQPDH EVSDYETKVP QLSSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A7e-16270168Myocyte-specific enhancer factor 2A
3mu6_B7e-16270168Myocyte-specific enhancer factor 2A
3mu6_C7e-16270168Myocyte-specific enhancer factor 2A
3mu6_D7e-16270168Myocyte-specific enhancer factor 2A
6bz1_A8e-16190191MEF2 CHIMERA
6bz1_B8e-16190191MEF2 CHIMERA
6bz1_C8e-16190191MEF2 CHIMERA
6bz1_D8e-16190191MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap880553
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0564570.0DQ056457.1 Arabidopsis thaliana MADS-box family protein (At1g22130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893213.10.0agamous-like MADS-box protein AGL104
SwissprotQ9LM460.0AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLD7KL040.0D7KL04_ARALL; Predicted protein
STRINGAl_scaffold_0001_23200.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.10.0AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]