PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 77000
Common NameC3HDZ3-1, SELMODRAFT_77000
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family HD-ZIP
Protein Properties Length: 822aa    MW: 91309.2 Da    PI: 6.5394
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
77000genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.57e-16664357
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
              k  ++t+eqle+Le +++++++ps  +r++L k+     ++  +q kvWFqNrR +ek+
     77000  6 KYARYTNEQLEILELVYNECPKPSSLRRQQLMKEApilaNIAPKQLKVWFQNRRCREKQ 64
              6678******************************999********************97 PP
2START1241.9e-391623722201
            HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHH....HHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
  START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallve....ellddkeqWdetlakaetlevissg..galqlmvaelq 99 
            lae+ ++++++ka+ ++  W ++  +++g+++  +++ s++++g a+ra g+v  +++++ e    e+l+dk  W  ++++ +++   ss   ++ + m ++l+
  77000 162 LAEQSLADFLAKATGTAVDWIQLLGMKPGPDSFGIVAISHGCDGIAARALGLVALEATRVSEwrivEVLKDKTSWLWDCRRSDVIHICSSEngSTMEIMHTQLY 265
            57888999**********************************************9999665444447899999************99998888*********** PP

            TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHH CS
  START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwva 198
            a+++l+p Rdf ++R + +l++g +v++++S++  ++ +    ++ +vRae+l+Sg+l++p+++g + v++++h dlk +++ + l+r+l++s+   +++++v+
  77000 266 APTTLAPpRDFCTLRLTTSLEDGNLVVCERSISDAECLSYvpsTQYFVRAEMLTSGYLVRPCEGGSCIVHIIDHLDLKPSSVsEVLTRPLYRSSSLLAQRMTVK 369
            *********************************9987554455999************************************66678***************** PP

            HTX CS
  START 199 tlq 201
            +l+
  77000 370 ALR 372
            996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.192165IPR001356Homeobox domain
SMARTSM003892.5E-12369IPR001356Homeobox domain
SuperFamilySSF466896.42E-14568IPR009057Homeodomain-like
PfamPF000462.4E-13664IPR001356Homeobox domain
CDDcd000861.20E-13666No hitNo description
Gene3DG3DSA:1.10.10.609.9E-16964IPR009057Homeodomain-like
CDDcd088754.78E-69156372No hitNo description
SMARTSM002341.3E-23161377IPR002913START domain
PROSITE profilePS5084823.525162377IPR002913START domain
PfamPF018525.1E-37163372IPR002913START domain
SuperFamilySSF559611.65E-26163345No hitNo description
Gene3DG3DSA:3.30.530.208.3E-19201350IPR023393START-like domain
PfamPF086701.4E-25675817IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
MDPQNKYARY TNEQLEILEL VYNECPKPSS LRRQQLMKEA PILANIAPKQ LKVWFQNRRC  60
REKQRKETSR LHGLNSKLTA LNKILVENND HLAKQSTQLT LQKHTLRKHL YGDCSSQRPP  120
MEASQVCRGA LAAGSSEIAG TSELPNIQHL SLDHGPVGLS ALAEQSLADF LAKATGTAVD  180
WIQLLGMKPG PDSFGIVAIS HGCDGIAARA LGLVALEATR VSEWRIVEVL KDKTSWLWDC  240
RRSDVIHICS SENGSTMEIM HTQLYAPTTL APPRDFCTLR LTTSLEDGNL VVCERSISDA  300
ECLSYVPSTQ YFVRAEMLTS GYLVRPCEGG SCIVHIIDHL DLKPSSVSEV LTRPLYRSSS  360
LLAQRMTVKA LRFLKHLAQE EIGEIVVGGG QQPSVLRSLS RRMARGFNDA VNGFPDDGWC  420
TMGGDGLDNV AVSCNATINF SLSKFQSDRL SSLAGVLCAK ASMLLQNVHP SYLIRFLRDH  480
RSEWGCNMDF FQQDAASRSH GKRQAHVPLF HTAKEDFLEA VILEGHYSAE DGTILSREIY  540
LLQLCSGIED EDIDGCSQLI FAPVDANLSD DMPLLSSGFR VLPLCDDMDD IVKRQSDSEE  600
LRSGKRKNHK FARSILTIAF QFMYEVGTRD TVAEMARNYI RNVMDFVQRI TLSLAASSLG  660
SSSADAPFVS SKGASLIHQI LQSYSVSHGV DIIPRNFTDK DAIVMLFWHY AAAIICCSLK  720
ASCPFYQSQA TPEFVIANQA GLQMLETKIE ELQTVSWERT IGYGLDSELA KLLREENGEL  780
PEGIAQTSKG KRVCYERGLV WRVDEQHLAL MFVNWSFQAG I*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6571982e-08Selaginella moellendorffii class III HD-Zip protein HDZ31 mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024525580.10.0homeobox-leucine zipper protein HOX32
RefseqXP_024540686.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLD8QT800.0D8QT80_SELML; Uncharacterized protein C3HDZ3-1
STRINGEFJ375650.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]