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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678466407 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | LFY | ||||||||
Protein Properties | Length: 433aa MW: 48995.5 Da PI: 7.3039 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 649.1 | 6.2e-198 | 36 | 414 | 1 | 386 |
FLO_LFY 1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrld 100 mdp+afs++lfkwdpr+ + ++rlle + + ap ++a ++ r+l +leelf+ayG+ry+t+akiaelGftv+tL+dm+deeld++m+sl++ifr+d 678466407 36 MDPDAFSSNLFKWDPRTGL-PGTNRLLEPVVPMVAPPQVAYSIRPRELGGLEELFQAYGIRYFTAAKIAELGFTVNTLLDMRDEELDEMMNSLCQIFRWD 134 9**************9876.778999999888888878899999999***************************************************** PP FLO_LFY 101 llvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkke 200 llvGeryGikaavraerrrl+eee ++rr+lls d+ +aldalsqeglseepvq+ekeaagsg +g +e++a+++ ++++ ++++++k+ + ++++ 678466407 135 LLVGERYGIKAAVRAERRRLDEEE--ARRRHLLSGDTIHALDALSQEGLSEEPVQQEKEAAGSGSGG--MWEMMAVPSGSRKH--QQQQRRKNYKGRSRM 228 **********************87..99999********************************9988..89999998543322..233233455555555 PP FLO_LFY 201 lkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkP 300 ++ e+d+d+++e++ +++ + +g erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq++akerGekcPtkvtnqvfryakkaga+yinkP 678466407 229 ASVEDDDDNDDETEGADDDDNCGGCERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNLAKERGEKCPTKVTNQVFRYAKKAGANYINKP 328 5556677777777777788888999*************************************************************************** PP FLO_LFY 301 kmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386 kmrhYvhCYalhcLde++s+alrrafkergenvGawrqacykplvaiaa qgwdida+fnahprL+iWYvPtkLrqLCh+ers+a+ 678466407 329 KMRHYVHCYALHCLDEDTSDALRRAFKERGENVGAWRQACYKPLVAIAAPQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERSAAA 414 **********************************************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 4.5E-204 | 36 | 413 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MLTSFKCRTL TQHQPYSSKC QNKQLLTLCA IVRKQMDPDA FSSNLFKWDP RTGLPGTNRL 60 LEPVVPMVAP PQVAYSIRPR ELGGLEELFQ AYGIRYFTAA KIAELGFTVN TLLDMRDEEL 120 DEMMNSLCQI FRWDLLVGER YGIKAAVRAE RRRLDEEEAR RRHLLSGDTI HALDALSQEG 180 LSEEPVQQEK EAAGSGSGGM WEMMAVPSGS RKHQQQQRRK NYKGRSRMAS VEDDDDNDDE 240 TEGADDDDNC GGCERQREHP FIVTEPGEVA RGKKNGLDYL FHLYEQCREF LIQVQNLAKE 300 RGEKCPTKVT NQVFRYAKKA GANYINKPKM RHYVHCYALH CLDEDTSDAL RRAFKERGEN 360 VGAWRQACYK PLVAIAAPQG WDIDAIFNAH PRLAIWYVPT KLRQLCHAER SAAAAAAASA 420 ASSVTGVAHM HPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 1e-105 | 252 | 411 | 2 | 161 | PROTEIN LEAFY |
2vy2_A | 1e-105 | 252 | 411 | 2 | 161 | PROTEIN LEAFY |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for flower development. FLO may interact in a sequential manner with other homeotic genes affecting floral organ identity. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678466407 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012856831.1 | 0.0 | PREDICTED: floricaula protein-like | ||||
Swissprot | P23915 | 0.0 | FLO_ANTMA; Floricaula protein | ||||
TrEMBL | A0A2G9GA06 | 0.0 | A0A2G9GA06_9LAMI; Uncharacterized protein | ||||
STRING | Migut.I00669.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6668 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-150 | floral meristem identity control protein LEAFY (LFY) |
Publications ? help Back to Top | |||
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