PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678465762
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 293aa    MW: 32571.3 Da    PI: 6.5206
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678465762genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF529.3e-171661247
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
               rie++   + tfskRr g+ KKA+EL++LC+++  +iifs+t+  y
  678465762 16 RIESQDDLYATFSKRRLGLYKKASELCTLCGVDMGIIIFSPTDIPY 61
               899**************************************97655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-21766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.194767IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-23882IPR002100Transcription factor, MADS-box
CDDcd002651.08E-30879No hitNo description
PRINTSPR004044.4E-13929IPR002100Transcription factor, MADS-box
PfamPF003196.2E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSGRQTRGRQ RIPIRRIESQ DDLYATFSKR RLGLYKKASE LCTLCGVDMG IIIFSPTDIP  60
YSFFSPTMES VIERYRNPSQ LTEPTRLGEA RSRAVIHQCN ARLDVILDEK EALRERERAL  120
DEIDRARERG WWEQPVETLG KEQVKEWISW WSAFQGKLGR RMHELTNAAG SSSNFAQGFC  180
SGLITQNCFP GDALQAGHGG GMVAGDQFQF PTQFYGAPGV QYAPVPGRNL QFYGAPGTQE  240
AGGGPSFTAQ FNENQFEFPA GGSNFQYYLP APGENEPGTG SSRTTDGGGY FPH
Cis-element ? help Back to Top
SourceLink
PlantRegMap678465762
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082025.13e-80proline-rich extensin-like protein EPR1 isoform X1
TrEMBLA0A022S1J23e-73A0A022S1J2_ERYGU; Uncharacterized protein
STRINGMigut.K00930.1.p6e-74(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-27AGAMOUS-like 61