PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678455156

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

SBP

Protein Properties

Length: 1005aa MW: 111987 Da PI: 6.1977

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678455156	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.6	2.4e-40	150	227	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv +C+adls+ak+yhrrhkvCevhska+ +lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ 678455156 150 ICQVVDCKADLSNAKDYHRRHKVCEVHSKASRALVGNIMQRFCQQCSRFHILEEFDEGKRSCRRRLAGHNKRRRKAHP 227 5**************************************************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.3E-31	144	212	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.735	148	225	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.97E-37	150	228	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.0E-29	151	224	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.13E-10	739	889	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.1E-8	739	890	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	8.16E-9	781	889	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1005 aa Download sequence Send to blast
MEAKVGGKLH RFCEPSVSDL NGLGKRSIEW DLNDWRWDGD FLRVSPLNPV PSDCRSGHPV 60 APQGPVKNGS LNFLASLSEK ALLENEMEKR DSEKRRRYIE VNQEHENDEA GSLDLVLGGQ 120 VFPVVDKETD KWEKSGKKFK LCGEQSTRTI CQVVDCKADL SNAKDYHRRH KVCEVHSKAS 180 RALVGNIMQR FCQQCSRFHI LEEFDEGKRS CRRRLAGHNK RRRKAHPENA AGSTSLNDDQ 240 GTKYLLISLL RILSNIQFNF NSPYFVITAG SSDQTRDQDL LSHLLKNLAA VSGSSNISNP 300 RGLLSVSPDF QNAGTSCGTT IRGNGSPDEI ALPLPHTSLT CKDALTDNAQ VGPARETSPL 360 RYATPSAKTS ACAERLKMNN IDLNSVYDDS EDHTEDLMYN VPLENPSPCV SPWSFKDSQR 420 SSPPQSQSPS TSSGEAQSRT DRIVFKLFGK DPNDFPHELR KQMIDWLSSS PTDIEGYIRP 480 GCIILTIYAC MDKSSWDELQ CNLNSSLKRL LDASSDPFWT TDWIYTRVQH RASFVYNGEV 540 VLDIPTLLGR AREGCWISMI SPIAVSFSET VHFSVKGYNL SGSTSSYWIY LVLEVCYNCI 600 RLLCALEGSY IFQESCADVV GADSFADNGE IQFLQFSCAV PNVVGRGFVE VEDYCLNSSF 660 FPFIVAEKDV CEAICDLEKV VDVSDSENLD ADKTEARNQA LNFVHEMGWL LHKHSLILSL 720 GETRDDVDLF SFRRFKCLIE YAIDHGWPAV ARKLLNVLFD GTVGTGKDTS AVTSLLDLGL 780 LHRAIRRNSI PMVKFLLEYQ PSGASSRSAD AHKETDCRSF LFRPDSTGPG GLTPLHIAAG 840 LDDAEDLVDA LTEDPESVGM GAWKSIRDYT GLTPHDYACL RGHYSYIYLV QRKQLSKSHG 900 QVVIDVPVTQ LDAAISKQKM ADVSSKMAVF HTEKTAGEMM SCRKCEQMLL YGSPKPSVAL 960 YRPAMLSMVL IAAVCVCAAL LFKSSPEVVY LFRPFRWELL KYGAE

Sequence ? help Back to Top

Protein Sequence Length: 1005 aa Download sequence Send to blast

MEAKVGGKLH RFCEPSVSDL NGLGKRSIEW DLNDWRWDGD FLRVSPLNPV PSDCRSGHPV  60
APQGPVKNGS LNFLASLSEK ALLENEMEKR DSEKRRRYIE VNQEHENDEA GSLDLVLGGQ  120
VFPVVDKETD KWEKSGKKFK LCGEQSTRTI CQVVDCKADL SNAKDYHRRH KVCEVHSKAS  180
RALVGNIMQR FCQQCSRFHI LEEFDEGKRS CRRRLAGHNK RRRKAHPENA AGSTSLNDDQ  240
GTKYLLISLL RILSNIQFNF NSPYFVITAG SSDQTRDQDL LSHLLKNLAA VSGSSNISNP  300
RGLLSVSPDF QNAGTSCGTT IRGNGSPDEI ALPLPHTSLT CKDALTDNAQ VGPARETSPL  360
RYATPSAKTS ACAERLKMNN IDLNSVYDDS EDHTEDLMYN VPLENPSPCV SPWSFKDSQR  420
SSPPQSQSPS TSSGEAQSRT DRIVFKLFGK DPNDFPHELR KQMIDWLSSS PTDIEGYIRP  480
GCIILTIYAC MDKSSWDELQ CNLNSSLKRL LDASSDPFWT TDWIYTRVQH RASFVYNGEV  540
VLDIPTLLGR AREGCWISMI SPIAVSFSET VHFSVKGYNL SGSTSSYWIY LVLEVCYNCI  600
RLLCALEGSY IFQESCADVV GADSFADNGE IQFLQFSCAV PNVVGRGFVE VEDYCLNSSF  660
FPFIVAEKDV CEAICDLEKV VDVSDSENLD ADKTEARNQA LNFVHEMGWL LHKHSLILSL  720
GETRDDVDLF SFRRFKCLIE YAIDHGWPAV ARKLLNVLFD GTVGTGKDTS AVTSLLDLGL  780
LHRAIRRNSI PMVKFLLEYQ PSGASSRSAD AHKETDCRSF LFRPDSTGPG GLTPLHIAAG  840
LDDAEDLVDA LTEDPESVGM GAWKSIRDYT GLTPHDYACL RGHYSYIYLV QRKQLSKSHG  900
QVVIDVPVTQ LDAAISKQKM ADVSSKMAVF HTEKTAGEMM SCRKCEQMLL YGSPKPSVAL  960
YRPAMLSMVL IAAVCVCAAL LFKSSPEVVY LFRPFRWELL KYGAE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-30	150	224	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	97	EKRRRY

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678455156

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020547976.1	0.0	LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 1
TrEMBL	A0A2G9I0L1	0.0	A0A2G9I0L1_9LAMI; Uncharacterized protein
STRING	XP_004297083.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12