PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678448327
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family AP2
Protein Properties Length: 610aa    MW: 67697.1 Da    PI: 6.371
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678448327genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.53.8e-09308352155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++gr++A+++d           +g ++ +++Aa+a++ a++k++g
  678448327 308 SQYRGVTRHRWTGRYEAHLWDN---------TCG-YDMEQKAARAYDLAALKYWG 352
                78*******************2.........244.99999*************98 PP
2AP2353.5e-11384429755
        AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                r++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  678448327 384 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 429
                8999********988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-7308352IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-12308361IPR016177DNA-binding domain
CDDcd000185.11E-16308360No hitNo description
SMARTSM003801.6E-19309366IPR001471AP2/ERF domain
PROSITE profilePS5103217.214309437IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-9309361IPR001471AP2/ERF domain
PRINTSPR003672.8E-6310321IPR001471AP2/ERF domain
SMARTSM003801.4E-27384443IPR001471AP2/ERF domain
PfamPF008471.3E-6384429IPR001471AP2/ERF domain
CDDcd000182.41E-21384439No hitNo description
SuperFamilySSF541718.5E-15385439IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-15385437IPR001471AP2/ERF domain
PRINTSPR003672.8E-6419439IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MNSDINNNSN WLGFKLSGSN MEASASAHQQ QQPCLSLVSS SSVVPMSFSS SSFAFPGICY  60
AGVEGENAAM NTPLIVMPLQ SDGSLCLMEA VNRPRLHPGM VHSTPKLEDF FGGIAMGTHH  120
FDRGGMVLSL DSVYYQQNPE NQANNGHDFL AHHHQEASRH RQIQAQDFTD YSTFRGQEMY  180
QASQTETPKD SQFNLHPPAA MAADEVTGMK SRVSACYQEN QKMALRGDES ASKSAAMGSI  240
GYGDLHSLSL SMRPGTQSSY VNGGGAHNLQ PSIRECIAPE NKKRGPEKVD QNQTMHRKSI  300
DTFGQRTSQY RGVTRHRWTG RYEAHLWDNT CGYDMEQKAA RAYDLAALKY WGASTHINFP  360
LEDYQQELEE MKNMSRQEYV AHLRRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY  420
DVAAIKFRGV NAVTNFDISR YDVERIMESS TLLSGETARR NKEAITSNEP ILAHPSYAND  480
NVDFDPSSKS CYDWRMGLYH QKPTPENFSI PPNSSPAMMG IGAITANQLG VDESEVKFTG  540
YLSNPSSLVS SFDSSREESP DRNNEYTLGF AIPPPPIGPH ILPVSTTSSW VPATQMKPQI  600
PLFTTWGDGS
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678448327
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099413.10.0AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z021e-103CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2Z7DCW70.0A0A2Z7DCW7_9LAMI; Uncharacterized protein
STRINGSolyc02g092050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20742460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-111AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]