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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678433827 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | AP2 | ||||||||
Protein Properties | Length: 540aa MW: 59440.5 Da PI: 8.2943 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.4 | 1.5e-12 | 224 | 280 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g 678433827 224 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 280 78*******************77776664346655.77******************98 PP | |||||||
2 | AP2 | 46.9 | 7e-15 | 323 | 374 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g 678433827 323 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 374 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.21E-14 | 224 | 289 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.1E-10 | 224 | 280 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.11E-18 | 224 | 288 | No hit | No description |
PROSITE profile | PS51032 | 16.937 | 225 | 288 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-12 | 225 | 289 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-21 | 225 | 294 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 226 | 237 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.44E-24 | 323 | 384 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-18 | 323 | 384 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.5E-10 | 323 | 374 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-18 | 324 | 382 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.979 | 324 | 382 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.4E-34 | 324 | 388 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 364 | 384 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MPMNEENGWL GFSLYPSMKM EAANPNLDVQ LTEASSASAM AYLSSFSNPQ NSDFSSSSSP 60 LSMMPLKSDG SLCILGGMVP SSPKLEDFLG GATMAAHDAM ALSLDSVFYG QEAFPGQPHL 120 VGRIPTMSVD EIQFHKTWSD QHQHFPHPIS INNNTMVVQN GGGSRDIQQC LSLSMSPGSQ 180 TSCVTASRQI SPTESVPKKR GSEKLAHKQT VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA 240 HLWDNSCKKE GQTRKGRQGG YDMEEKAARA YDLAALKYWG PSTHINFALE NYHQELEEMK 300 NMSRQEYVAH LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE 360 AAEAYDIAAI KFRGINAVTN FDISRYDVDK IMSSSSLPSG GEVVRRSKIE NCPQPNSATD 420 WKIVLCEQPR NGILEPPLMR GSYQYQGPPA FAVGLHDLIG ASSMQRDVHG CNAGADAAPP 480 QFSNPSSIVS SMNSSREASP DRFGAHHILK TQAAAMGSNS SMLLSSNAIH FPFFAAWNDT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678433827 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074331.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-144 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A0G2SJF0 | 0.0 | A0A0G2SJF0_SALMI; AP12/EREBP Transcription Factors | ||||
STRING | Gorai.010G028100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-134 | AP2 family protein |