PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678417899
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 1077aa    MW: 120686 Da    PI: 8.5841
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678417899genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94e-074377339
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                     rWTt+E  ++++  ++ G++ Wk++a+ +  +Rt+ +
        678417899 43 RWTTDELTRFYHSYRKSGKD-WKKVASAVK-NRTPDM 77
                     9*****************99.********9.***865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.79E-84086IPR009057Homeodomain-like
CDDcd001670.003174378No hitNo description
SMARTSM011351.9E-54614715IPR033471DIRP domain
PfamPF065843.8E-33614714IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1077 aa     Download sequence    Send to blast
MGPPRKSKSV NKRYDEASPI KEEYGSKRSS SRKRKLTGML GPRWTTDELT RFYHSYRKSG  60
KDWKKVASAV KNRTPDMVEA LHSMNKAYLS LPHGTASAAG LIAMMTDHYS NLAGSDSDRD  120
SNDGAGSSRR IQNRARGKNP SKALDEHYAS QSPITESDIG CISLLKRKRS GMRPRPVGKR  180
TPRFPVSFSH DNTNVIYSSP NKRLKLEDYA DDEEVALALA LTEASQRGGS PQVSGTPSKI  240
AETVMTSHFR HTLRKHTAVE AATKIFPNEM DEEDLEGSAE ADTGELIRSI GDEAIRKRNV  300
NHEGGNIETD IHNENHANDI KEECSGTEEG HGLHVAGSKF DVEVNDSKGF LTTQTQRKKT  360
KKGLFRKDEG PIFDALQTLA DLSLSMPPDN EDVSTLQLKE NQGHADESMP LETNPIHSRE  420
KFRSSGIRMK APLVSEGASR KTSKPRKQAD FDDGSVLEKT QDPGHAITKT GRKTRKKKEA  480
KDDTLVTRTP RVEAADSGKK MPKGRVSPQR GSQSLIKISE NSFNADARKE ASDSGQSAAQ  540
NPEPNQDMLP IKVKCKRKTV AKKLEAQKDP KLSDKKPCDH SSLPEIAINL KDQNKLSSCL  600
SNQHLRRFCT FEWFYSAIDY PWFAKKEFDE YLNHVGLGHV PRLTRTEWSF IRSSLGKPRR  660
FSKQFLKQEK DKLNQYRDSV RKHYTELREG TREGLPTDLA RPLSVGQRVI AIHPKTREIQ  720
DGSVLTVDHS RFHVQFNRSD LGVEFVMDID CMPLNPIENM PAMLGRRIAF ADRHFESNEQ  780
KTSGLVKEYT KVSHDDNLEN ADGAPHSSPF ANHVAASLKE TKVHSKEADA EALADLSRAL  840
NKKEAIVAEL RLMNDDVLES QKDGGSSLKD QETFEKRYAA VLMMLNEANE QVACALRHLR  900
QRNKYLETRQ LASPATNLSD HIGTWDPFDR PGDEPGSHVS DIMDSSRTKA QMMLDAAIQA  960
MSSLNSRTDD IQKIEEAIDY VNDRLPTDEP CVTDQKPINP PEVEAQYPYD LIMKCIATMV  1020
MIQKCTERQF PPSDVAQILD YAVTSLQPRS SQNLPVYTDI QKCFGIIKNQ ILALIPT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1471478RKTRKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMap678417899
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071459.10.0protein ALWAYS EARLY 3
TrEMBLA0A4D9BLF30.0A0A4D9BLF3_SALSN; Uncharacterized protein
STRINGMigut.G00183.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-168DNA binding