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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678373377 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | AP2 | ||||||||
Protein Properties | Length: 686aa MW: 75616.8 Da PI: 6.5074 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.1 | 5.3e-14 | 346 | 409 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ng...kr.....krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d s+ g + ++lg ++ +e+Aa+a++ a++k++g 678373377 346 SQYRGVTRHRWTGRYEAHLWDNSSsFGspkSCymdelVPVYLGGYDMEEKAARAYDLAALKYWG 409 78*******************555677797335789**************************98 PP | |||||||
2 | AP2 | 46 | 1.3e-14 | 452 | 503 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g 678373377 452 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 503 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-14 | 346 | 419 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.07E-18 | 346 | 417 | No hit | No description |
Pfam | PF00847 | 4.6E-9 | 346 | 409 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.754 | 347 | 417 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-14 | 347 | 418 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-24 | 347 | 423 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-6 | 348 | 359 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-18 | 452 | 513 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.6E-10 | 452 | 503 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.95E-26 | 452 | 513 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-18 | 453 | 511 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.124 | 453 | 511 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-34 | 453 | 517 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-6 | 493 | 513 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 686 aa Download sequence Send to blast |
MSSESNNSNT NNWLGFSLSG CSNMEASASA HHHHQQQQQQ QQQQQPCPNQ VSSSSVVPLS 60 FPSSSFAFPG IYYGGVEGEN AGMNSPLIVM PLKSDGSLCL MEAINRSQPQ GLSDLPGKNF 120 TLAVNILIFC LVFHCGGMVN STPKLEDFFG GIAMGTHHFD RGGMALSLDS MYYQQNPENQ 180 ANNGHDFSGH HHQETSRHHH IQVQEFTDYP PFRGQEMYQT SQTEAPKDSQ FSLHPPAAMT 240 DDEISGMKNW VSRRYQENQK MALCGEASAS ESAAMGSLGY GDLHSLSLSM SPGSQSSCVN 300 GGGAHHVQAS MAECMALENK KRGPEKVDQK QIVHRKSIDT FGQRTSQYRG VTRHRWTGRY 360 EAHLWDNSSS FGSPKSCYMD ELVPVYLGGY DMEEKAARAY DLAALKYWGP STHINFPLEN 420 YQQELEEMKN MSRQEYVAHL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY 480 LGTFSTQEEA AEAYDVAAIK FRGVNAVTNF DISRYDVERI MESNTLLSGE TARRSKEGIT 540 ANEPTLALPS YPNDNVDLNP SSKSNNDWRM VLYHQKAVPE NFGILPNSSS AMMGIEAIAG 600 DQLGGDESEV KITGHLSNAS SLVTSFSSSR EGSPDRNNGY PLGFAIPQPP IGPNFLPVST 660 TPTSSWIPAT QMRPQMPLFS AWGDGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678373377 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099413.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Swissprot | Q38914 | 1e-146 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A2Z7DCW7 | 0.0 | A0A2Z7DCW7_9LAMI; Uncharacterized protein | ||||
STRING | Solyc02g092050.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-126 | AP2 family protein |