PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678370149 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | WOX | ||||||||
Protein Properties | Length: 252aa MW: 28281.1 Da PI: 10.0648 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.2 | 2.1e-21 | 97 | 156 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+ qle+Le +++ +r+p+a+++++++++l +++ ++V++WFqNr+a+ekk 678370149 97 TRWNPTPAQLEALEGIYRRgTRTPTADQIQQITARLkrlgNIERKNVFYWFQNRKAREKK 156 8*****************99***************************************8 PP | |||||||
2 | Wus_type_Homeobox | 102.6 | 2.7e-33 | 96 | 157 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +tRW+Ptp Q++ Le +y++G+rtP++++iq+ita+L++ G+ie kNVfyWFQNrkaRe++k 678370149 96 STRWNPTPAQLEALEGIYRRGTRTPTADQIQQITARLKRLGNIERKNVFYWFQNRKAREKKK 157 79**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.9E-6 | 94 | 161 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.86E-9 | 97 | 158 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-11 | 97 | 157 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.5E-13 | 97 | 162 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.1E-19 | 97 | 156 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 12.034 | 102 | 157 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MSFLVSSSCL LRSNSHSSLS PSPNIVPTPS FVHSYITCTH APGSWLPPST TMMNHGEVRC 60 LPDPVSGHRM QLHDPQNPNI FPLHGEAKAA APCVVSTRWN PTPAQLEALE GIYRRGTRTP 120 TADQIQQITA RLKRLGNIER KNVFYWFQNR KAREKKKNRR LFELFPDEKW ILPSRKKQPG 180 SVDIAEDGRD KLSRLTGSSS IYSSSSTPTE GRAVKGEGDH EAEACQESGN PFAWRRIVAP 240 PHEFIEFLPT KK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 160 | EKKKNRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678370149 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006583454.1 | 1e-30 | WUSCHEL-related homeobox 1 | ||||
Refseq | XP_028239925.1 | 1e-30 | WUSCHEL-related homeobox 1-like | ||||
TrEMBL | A0A0B2SHU4 | 2e-29 | A0A0B2SHU4_GLYSO; WUSCHEL-related homeobox 1 | ||||
TrEMBL | K7L0T1 | 2e-29 | K7L0T1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G11372.1 | 4e-30 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12201 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 4e-23 | WUSCHEL related homeobox 1 |