PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678365339
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 290aa    MW: 32593.9 Da    PI: 7.8806
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678365339genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05147166120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++Cp C k+F+r  n++ H+
  678365339 147 FSCPVCLKTFNRYNNMQMHM 166
                89*****************9 PP
2zf-C2H210.60.0018231253123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C +Cgk    + + ++H +++
  678365339 231 FVCRKCGKALAVRGDWRTHEKNC 253
                89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66147174IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-6147166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
SuperFamilySSF576671.55E-5213251No hitNo description
Gene3DG3DSA:3.30.160.605.7E-4217251IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSDPHSSLFC KPHFSISHKP NPQFFSNSNS YFHPSSSFTA PPLVEALPLL RLTPPGSDEK  60
TTLFDSKAEA ASVDNGVTVA LHIGLPNPDL SASLISSEYK EEEEEEEEEE EEEESYPDLS  120
GLLISRINKG QYWIPTPSQI LIGPTQFSCP VCLKTFNRYN NMQMHMWGHG SQYRKGHESL  180
RGTQPTAMLR LPCYCCAPGC RNNIDTPRAK PLKDFRTLQT HYKRKHGIKP FVCRKCGKAL  240
AVRGDWRTHE KNCGKLWYCV CGSDFKHKRS LKDHIKAFGA GHGALAPDDV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678365339
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075201.11e-130zinc finger protein WIP2
RefseqXP_018807465.11e-130PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-120ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2R6QV701e-131A0A2R6QV70_ACTCH; Zinc finger protein
TrEMBLA0A2Z7CH791e-131A0A2Z7CH79_9LAMI; Uncharacterized protein
STRINGXP_010257283.11e-129(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-117C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]