PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678361698
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 262aa    MW: 29443.2 Da    PI: 8.382
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678361698genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.26.7e-0695114120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++Cp C k+F+r  nL+ H+
  678361698  95 FSCPLCFKTFNRYNNLQMHM 114
                89*****************9 PP
2zf-C2H211.60.00083179201123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C  C+k F  k + ++H +++
  678361698 179 FACRRCSKAFAVKGDWRTHEKNC 201
                78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.8E-587117No hitNo description
PROSITE profilePS5015710.1895122IPR007087Zinc finger, C2H2
SMARTSM003550.3495117IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-595114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SMARTSM00355150141174IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.29E-6161199No hitNo description
Gene3DG3DSA:3.30.160.601.7E-5165199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355130179199IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MKNQTCFNFL PLHSSTEEPH VSVPNSSSHG GEVDLQIGLG SQPDDHRSRV FSNDQTAAEK  60
DGIDILSGLP LNKLNMGGQY WIPTPTQILI GPTQFSCPLC FKTFNRYNNL QMHMWGHGSQ  120
YRKGPESLRG TQPSAMLRLP CYCCWPGCKH NVDDPRGRPL KDFRTLQTHY KRKHGAKPFA  180
CRRCSKAFAV KGDWRTHEKN CGKVWYCCCG SDFKHKRSLK DHIKAFGHGH GAGVRNNGGN  240
LDAEDDAGDW LSEVEEPEFV VV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678361698
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024628367.11e-113zinc finger protein WIP2-like
RefseqXP_024628368.11e-113zinc finger protein WIP2-like
SwissprotQ9SVY11e-105ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A4D9BAM81e-115A0A4D9BAM8_SALSN; Uncharacterized protein
TrEMBLS8DBD81e-116S8DBD8_9LAMI; Uncharacterized protein (Fragment)
STRINGAET021781e-113(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-107C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]