PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678347861

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 303aa MW: 33885.5 Da PI: 8.155

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678347861	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.1	2.5e-47	11	161	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.......................kvka..eekewyfFskrdkkyatgkrk 74 lppGfrFhP+deel++++L k v+g ++ ++ +vd++k+ePw++p k + a + ++wyf+s+rd+ky+tg r+ 678347861 11 LPPGFRFHPRDEELICDFLGKWVSGCASQT-AHLIQVDLNKCEPWNIPgKpqassllegftifldseflckaeS--AcvGGRDWYFYSPRDRKYSTGIRT 107 79***********************998.67889*******954899*****999999885542..044889************** PP NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 nrat+sgyWkatgkd++v + kg +vg +ktLvfy+grapkg+kt+Wvmhe+rle 678347861 108 NRATESGYWKATGKDRAVSR-KGVVVGRRKTLVFYQGRAPKGRKTQWVMHEFRLE 161 **************99.999**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-51	4	187	IPR003441	NAC domain
PROSITE profile	PS51005	50.834	11	187	IPR003441	NAC domain
Pfam	PF02365	1.5E-24	12	160	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MGSLSAVEER LPPGFRFHPR DEELICDFLG KWVSGCASQT AHLIQVDLNK CEPWNIPGKP 60 QASSLLEGFT IFLDSEFLCK AESACVGGRD WYFYSPRDRK YSTGIRTNRA TESGYWKATG 120 KDRAVSRKGV VVGRRKTLVF YQGRAPKGRK TQWVMHEFRL EHQLSALPPD FTPPQQADWV 180 LCRVSYKSRS PSSSSSKSKL DSCLQLEPPL LDLGQQFVFD QAMPFGFEQV PCFSIFQTPM 240 NQPRDNRREM LPDCCYGNAT FSNEGSSLGA GALNRFTGME AFTSIPALGA ATCTETGHVF 300 FCP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-41	11	190	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-41	11	190	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-41	11	190	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-41	11	190	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	3e-41	11	190	20	170	NAC domain-containing protein 19
3swm_B	3e-41	11	190	20	170	NAC domain-containing protein 19
3swm_C	3e-41	11	190	20	170	NAC domain-containing protein 19
3swm_D	3e-41	11	190	20	170	NAC domain-containing protein 19
3swp_A	3e-41	11	190	20	170	NAC domain-containing protein 19
3swp_B	3e-41	11	190	20	170	NAC domain-containing protein 19
3swp_C	3e-41	11	190	20	170	NAC domain-containing protein 19
3swp_D	3e-41	11	190	20	170	NAC domain-containing protein 19
4dul_A	3e-41	11	190	17	167	NAC domain-containing protein 19
4dul_B	3e-41	11	190	17	167	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678347861

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012072721.1	6e-88	NAC domain-containing protein 21/22
TrEMBL	R4NFR8	1e-86	R4NFR8_JATCU; NAC transcription factor 008
STRING	Migut.M01566.1.p	1e-79	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	2e-62	NAC domain containing protein 1