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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678337105 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | LFY | ||||||||
Protein Properties | Length: 407aa MW: 45970.8 Da PI: 6.3012 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 609 | 9.3e-186 | 1 | 391 | 1 | 386 |
FLO_LFY 1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrld 100 mdp+afs++lfkwdpr+ + ++rlle+ + + ap +aa + r+ +lee+f+ yG+ry+t+akiaelGftv+tL+dm+deel+++m+s+++ifr+d 678337105 1 MDPDAFSTNLFKWDPRTGL-PGSNRLLESVVPMVAPPQAAYPIRPREQGGLEEFFQPYGIRYYTAAKIAELGFTVNTLLDMRDEELEEMMNSICQIFRWD 99 9**************9876.77789998888888887888899999999*************************************************** PP FLO_LFY 101 llvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkke 200 llvGeryGikaavraerrrl+eee ++rr+lls d+++aldalsqeglseepvq+ekeaagsg +g +e+va+++ +++++++ + ++k+ + ++ 678337105 100 LLVGERYGIKAAVRAERRRLDEEE--ARRRHLLSGDTTHALDALSQEGLSEEPVQQEKEAAGSGSGG--MWEMVAVPSGSRKQQQQLQ-RRKNYKALSRI 194 **********************87..99999********************************9988..9999999964433333333.22222222332 PP FLO_LFY 201 lkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqv.f..........rya 289 ++e+d+d++++++ +++ + +g erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq++akerGekcPtkv f r+a 678337105 195 GSMEDDDDDDDDTEGPDDDDNCGGYERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNLAKERGEKCPTKVSSTAqFrilaltvknpRHA 294 2333455555555666677788899********************************************************64321322233344448** PP FLO_LFY 290 kkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386 kkaga+yinkPkmrhYvhCYalhcLde++s+alrrafkergenvGawrqacykplvaiaa qgwdida+fnahprL+iWYvPtkLrqLCh+ers+a+ 678337105 295 KKAGANYINKPKMRHYVHCYALHCLDEDTSDALRRAFKERGENVGAWRQACYKPLVAIAAPQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERSAAA 391 *********************************************************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 4.7E-191 | 1 | 390 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MDPDAFSTNL FKWDPRTGLP GSNRLLESVV PMVAPPQAAY PIRPREQGGL EEFFQPYGIR 60 YYTAAKIAEL GFTVNTLLDM RDEELEEMMN SICQIFRWDL LVGERYGIKA AVRAERRRLD 120 EEEARRRHLL SGDTTHALDA LSQEGLSEEP VQQEKEAAGS GSGGMWEMVA VPSGSRKQQQ 180 QLQRRKNYKA LSRIGSMEDD DDDDDDTEGP DDDDNCGGYE RQREHPFIVT EPGEVARGKK 240 NGLDYLFHLY EQCREFLIQV QNLAKERGEK CPTKVSSTAQ FRILALTVKN PRHAKKAGAN 300 YINKPKMRHY VHCYALHCLD EDTSDALRRA FKERGENVGA WRQACYKPLV AIAAPQGWDI 360 DAIFNAHPRL AIWYVPTKLR QLCHAERSAA AAAAASSITG VGHMQPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 3e-98 | 218 | 401 | 2 | 174 | PROTEIN LEAFY |
2vy2_A | 3e-98 | 218 | 401 | 2 | 174 | PROTEIN LEAFY |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for flower development. FLO may interact in a sequential manner with other homeotic genes affecting floral organ identity. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678337105 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012856831.1 | 0.0 | PREDICTED: floricaula protein-like | ||||
Swissprot | P23915 | 0.0 | FLO_ANTMA; Floricaula protein | ||||
TrEMBL | A0A2G9GA06 | 0.0 | A0A2G9GA06_9LAMI; Uncharacterized protein | ||||
TrEMBL | A5A4R2 | 0.0 | A5A4R2_PLESU; Floricaula | ||||
STRING | Migut.I00669.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6668 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-133 | floral meristem identity control protein LEAFY (LFY) |
Publications ? help Back to Top | |||
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