PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678334972 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ARF | ||||||||
Protein Properties | Length: 857aa MW: 94724.4 Da PI: 6.0112 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 80.1 | 2.2e-25 | 143 | 244 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk+lt sd++++g +++p++ ae+ ++++++ ++l+++d++ +sW++++iyr++++r++lt+GW+ Fv a++L++gD v+F ++++ +l+v 678334972 143 FFKTLTASDTSTHGGFSVPRRAAEKLfpsldfSMQPPS-QELVVRDLHDNSWNFRHIYRGQPKRHLLTTGWSMFVGAKQLRAGDAVLFV--RDEKSQLLV 239 99*********************999*****9556554.69************************************************..4577778** PP EEE-S CS B3 95 kvfrk 99 +v+r+ 678334972 240 GVRRA 244 ***97 PP | |||||||
2 | Auxin_resp | 113.1 | 2.6e-37 | 269 | 352 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa++++ F+++YnPra++seF++++++++ka+ ++svGmRf m+fete+s++rr++Gt+ g+sdldp rWpnSkWr+L+ 678334972 269 AAHAAANHTSFTIFYNPRACSSEFIIPFARFRKAVFgAQLSVGMRFGMMFETEESNKRRYMGTIHGISDLDPRRWPNSKWRCLQ 352 79********************************9889*********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.09E-45 | 131 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-41 | 136 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.74E-23 | 142 | 243 | No hit | No description |
PROSITE profile | PS50863 | 13.733 | 143 | 245 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-23 | 143 | 244 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-23 | 143 | 245 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.2E-32 | 269 | 352 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.4E-8 | 748 | 834 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.883 | 749 | 832 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.24E-8 | 763 | 827 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 857 aa Download sequence Send to blast |
MASDEGKLRP VGGSNNLLEE MKVLKEMQHN TVSRKHINTE LWHACAGPLV TLPEPGSLVY 60 YFPQGHSEQV AVSTNTTSTT QMPNYPNLPP QLLCQVHNVT LHADKYTDEI YAQISLHPVS 120 SDKDIISVPE FGVQPSKHPT DFFFKTLTAS DTSTHGGFSV PRRAAEKLFP SLDFSMQPPS 180 QELVVRDLHD NSWNFRHIYR GQPKRHLLTT GWSMFVGAKQ LRAGDAVLFV RDEKSQLLVG 240 VRRASRPQAT LPSSVLSADS MHIGILAAAA HAAANHTSFT IFYNPRACSS EFIIPFARFR 300 KAVFGAQLSV GMRFGMMFET EESNKRRYMG TIHGISDLDP RRWPNSKWRC LQVEWDEPGC 360 GDKNNRVSPW EIETPESLFI FPSLAANFKR PFKSTFMGSS TEWDSVMNMP FLQVADSSSP 420 GMWSDPIKKT HVKPLASAIR SASDDATLKE FNSLQSAVKQ KPDSDDVLPL EESHNSNVVF 480 QGKAKIVGNF TSFGNNTEDC IQGSPLMNQL TSPGQCNEEK VVAKQIYPQC HAHDLGTVEQ 540 NPLLQYPGQG DFESSLATYS SMESFRHPGS LCMVKNHQSP PLDTLHVPQE SQELMDAHIA 600 GTSCTTQTIS HPVLLSQQDI TSSSYSSCWQ KVRTADKSNH GDIYGCLNLD VSNCGSTVID 660 PSVSSMLLDG FCGIKNENFH NPSECLVGNF SSNQDVQSQI TSASLADSQA FSMQEYADNS 720 GGTSSSNVGF DDNTFLQHGS WNQVAPRCRT YTKIQKAGSV GRSIDVSAFK YYDELRSEIE 780 SMFGLEGLLN DLGSGWKLVY VDFEGDVLLV GDDPWGEFIC CVKCIRILSP SEVKRMGEEG 840 MQLLNSVGIV DGSYATR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 15 | 377 | 31 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678334972 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083507.1 | 0.0 | auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A191T8S8 | 0.0 | A0A191T8S8_SALMI; Auxin response factor | ||||
STRING | XP_009778804.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5859 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |