PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678314388

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

WRKY

Protein Properties

Length: 274aa MW: 31355.2 Da PI: 7.1399

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678314388	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	91.8	5.4e-29	98	157	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 +D ++WrK+GqK++kgs++prsYYrC+s+ gC+++k+ve+s +dp+ ++itY+geH h+k 678314388 98 SDVWAWRKFGQKPIKGSPYPRSYYRCSSSkGCSARKQVEQSCTDPRKFIITYTGEHSHSK 157 79***********************998**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.6E-29	84	158	IPR003657	WRKY domain
PROSITE profile	PS50811	32.294	92	158	IPR003657	WRKY domain
SuperFamily	SSF118290	5.62E-25	94	158	IPR003657	WRKY domain
SMART	SM00774	6.2E-32	97	157	IPR003657	WRKY domain
Pfam	PF03106	1.3E-24	99	155	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MAGFDEEDLR EWSLEGWKDD VEEKSGKGQR SLEWFPDSSE VSNREPFYPH PLPSSAVLRF 60 QERRNGKDAA DDHLSGGKKR KSQQKRVAVH VSAGELTSDV WAWRKFGQKP IKGSPYPRSY 120 YRCSSSKGCS ARKQVEQSCT DPRKFIITYT GEHSHSKPTR RNSLPGTVGL KFPVTNRCSR 180 PERNVSATDV GRGVKEERQS PESEAVVKNV TSEDHEDDML ISEFLMNDDF FSGLEELDEF 240 FRIQIVKTDA FINICLLVLF CFLFKGHFQY LCPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-18	95	158	15	77	Probable WRKY transcription factor 4
2lex_A	2e-18	95	158	15	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269\|PubMed:11875555}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678314388

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced after flagellin treatment. {ECO:0000269\|PubMed:11875555}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081142.2	7e-58	probable WRKY transcription factor 29
Swissprot	O04609	1e-42	WRK22_ARATH; WRKY transcription factor 22
TrEMBL	A0A2G9GRG6	6e-59	A0A2G9GRG6_9LAMI; Uncharacterized protein
STRING	Migut.A00718.1.p	1e-56	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5781	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	4e-33	WRKY family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507] Gkizi D, et al. The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae. Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23 [PMID:26780421] Kloth KJ, et al. AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling. J. Exp. Bot., 2016. 67(11): p. 3383-96 [PMID:27107291] Camborde L, et al. Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy. Nat Protoc, 2017. 12(9): p. 1933-1950 [PMID:28837131] Wang S, et al. Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22. Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322 [PMID:29090631]