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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678310540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | C2H2 | ||||||||
Protein Properties | Length: 147aa MW: 16265.5 Da PI: 6.4805 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 100 | 116 | 1 | 17 |
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++Cp C k+F+r nL+ 678310540 100 FSCPLCFKTFNRYNNLQ 116 89************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MMRDQATWFN FLPLHSTATS IQSRGSFLSL QDSHGETDLQ IGLPCQQQAS DQGSRVSSDD 60 QTAEKDGVDI LSGLPLNKLN MGGQYWIPTP SQILIGPTQF SCPLCFKTFN RYNNLQVRSL 120 MNGICPRLLC VFWGDLIISG TGNVPIR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678310540 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087571.1 | 3e-25 | zinc finger protein WIP2-like | ||||
Refseq | XP_029129760.1 | 2e-25 | zinc finger protein WIP2-like | ||||
TrEMBL | A0A4D8XQ48 | 5e-27 | A0A4D8XQ48_SALSN; Uncharacterized protein | ||||
STRING | AET02178 | 1e-24 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15659 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 3e-20 | C2H2 family protein |