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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678299647 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 208aa MW: 22888.5 Da PI: 8.2171 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.8 | 5.9e-23 | 16 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie k+n qvtfskRr+g++KKA+EL++LC++e+a+++fs+ k++ + 678299647 16 KIEAKTNLQVTFSKRRAGLFKKASELCTLCGVEIAIVVFSPAKKIFSF 63 79****************************************999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.46 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-31 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.94E-27 | 8 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.06E-33 | 8 | 76 | No hit | No description |
PRINTS | PR00404 | 7.9E-19 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-24 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-19 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-19 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MAKKPSLGRR KIKIAKIEAK TNLQVTFSKR RAGLFKKASE LCTLCGVEIA IVVFSPAKKI 60 FSFGHPEVRP IVDRFLARNT ETGCLAGNDG GGIFELNAHL DQILDEVEME KERGQVLEKM 120 RRSGGGYWWE EPVEKLGLQE VEQLRDAMEE LRKKVGETAA RIAAFDPYEL AFLGNPAAIG 180 LGSAAAAKAH LDPINENLGF LHGFFCGC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 7e-15 | 7 | 81 | 1 | 71 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 7e-15 | 7 | 81 | 1 | 71 | Myocyte-specific enhancer factor 2B |
1tqe_R | 7e-15 | 7 | 81 | 1 | 71 | Myocyte-specific enhancer factor 2B |
1tqe_S | 7e-15 | 7 | 81 | 1 | 71 | Myocyte-specific enhancer factor 2B |
6c9l_A | 7e-15 | 7 | 81 | 1 | 71 | Myocyte-specific enhancer factor 2B |
6c9l_B | 7e-15 | 7 | 81 | 1 | 71 | Myocyte-specific enhancer factor 2B |
6c9l_C | 7e-15 | 7 | 81 | 1 | 71 | Myocyte-specific enhancer factor 2B |
6c9l_D | 7e-15 | 7 | 81 | 1 | 71 | Myocyte-specific enhancer factor 2B |
6c9l_E | 7e-15 | 7 | 81 | 1 | 71 | Myocyte-specific enhancer factor 2B |
6c9l_F | 7e-15 | 7 | 81 | 1 | 71 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678299647 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088151.1 | 1e-71 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q4PSU4 | 8e-51 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | S8D0Q8 | 6e-82 | S8D0Q8_9LAMI; Uncharacterized protein | ||||
STRING | XP_009761267.1 | 9e-67 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-48 | AGAMOUS-like 61 |
Publications ? help Back to Top | |||
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