PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678293982
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 300aa    MW: 34249.9 Da    PI: 5.8999
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678293982genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.72.8e-29143201259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve+s +dp+ ++itY+ eH h+
  678293982 143 SDMWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVEQSCTDPEKFIITYTAEHSHS 201
                79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-30129203IPR003657WRKY domain
PROSITE profilePS5081132.432137203IPR003657WRKY domain
SuperFamilySSF1182902.48E-25138203IPR003657WRKY domain
SMARTSM007741.2E-33142202IPR003657WRKY domain
PfamPF031061.1E-24144200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAGFKIGAED WGLHAIVRES SGEFPKFCDL ETNDDHYSAS PLFDLSAGAV SDHDFFPLFP  60
EVFETSKDDQ LEDLYKPFYQ VPPHPLPSST VIDFQERNPD DEMKSSSGSD ATATAPDYTP  120
KYKRRKSHQK RVVIQVSAEG LTSDMWAWRK YGQKPIKGSP YPRSYYRCSS SKGCLARKQV  180
EQSCTDPEKF IITYTAEHSH SQPTRRNSLA GTVRQKFPPG KITLKKENLD GESPKTLHHH  240
RHESPASAWP LARRETNNKQ HVSENQVFVK TEEEEEDHLP VSDLIFNQDF SGLEEFDDFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-17134203877Probable WRKY transcription factor 4
2lex_A2e-17134203877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122127KRRKSH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678293982
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081142.22e-88probable WRKY transcription factor 29
TrEMBLA0A2G9GRG64e-93A0A2G9GRG6_9LAMI; Uncharacterized protein
STRINGMigut.A00718.1.p5e-83(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57812335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.16e-44WRKY family protein