PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676794972
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 634aa    MW: 73276 Da    PI: 6.13
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676794972genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.11.1e-1082556312373
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNq 100
                ++lL++cA+avs+gd++ a  l  ++++ +sp gd+ qRla++f++AL+arl++s+  + ++  ++ ++ +++ ++ l+a++++   sP++++ ++   +
  676794972 255 RTLLTHCAQAVSTGDKTTALDLFFQIRQESSPFGDASQRLAHCFANALEARLQGSTGPVIQTYyNAITSLKETAADILKAYRVYLSSSPFVTLMYFFSFR 354
                689***************************************************7777776664777777888*************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                +Ilea++ +e +Hi+Df+i +G+QWp ++q ++ R++ + +lRiTg++ p+ g   +e++eetg+rL++++++++vpfe+++++++++e+++++e++++p
  676794972 355 MILEAAKDAEVLHIVDFGILYGFQWPMFIQYMSGRTDVAKKLRITGIELPQRGlrPAERIEETGRRLSEYCKRFNVPFEYKAIASQNWETIRINEFDIRP 454
                ****************************************************9******************************999************** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                +E+l+Vn  l+l++l de++s e  +rd+vLkl+++++P+v+v++  + + n++ F  rf ea+++ysalfd+++++lpr+++eri  Ere+ gre++nv
  676794972 455 NEVLVVNAGLRLKNLQDETGSEEMcPRDAVLKLIRKMNPDVFVHAVVNGSFNAPFFISRFKEAVYHYSALFDMFDTTLPRDNQERIRFEREFYGREAMNV 554
                **********************9999************************************************************************** PP

       GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                +ace+a+r+er et+++W+ r+ +aGFk+ p+++++++  ++ l+k    + + v+e+s++l++gWk+r+L++ S+W
  676794972 555 IACEEADRVERPETYRQWQVRMVRAGFKQKPVKSDIVDLFRAKLKKWRcHKDFVVDENSKWLLQGWKGRTLYASSCW 631
                **************************************99999999998899************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.008228611IPR005202Transcription factor GRAS
PfamPF035143.7E-106255631IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MDPNFEYHDE SLYLNPNLDN SFPSLDFLSD PREDQYSSLQ SDEKDSSNTL LRYVSQILME  60
EGDKQSMFYD SLALRRTEEM LQQVITDSKA SSFTSPESML TSSDASGGSI ESSYRVSQPV  120
NEILVKSMFS DAESDLQFRK GLEEARRFLP NSDQWVINLD RPVTVKEEVG SDHLRVKKKH  180
EREVLDFEET RSFKQSATNV EDGKITDMFD KVLLLDGECD PQTLSENKTE DILSNNKKKQ  240
TKKTKKKKSQ VVDFRTLLTH CAQAVSTGDK TTALDLFFQI RQESSPFGDA SQRLAHCFAN  300
ALEARLQGST GPVIQTYYNA ITSLKETAAD ILKAYRVYLS SSPFVTLMYF FSFRMILEAA  360
KDAEVLHIVD FGILYGFQWP MFIQYMSGRT DVAKKLRITG IELPQRGLRP AERIEETGRR  420
LSEYCKRFNV PFEYKAIASQ NWETIRINEF DIRPNEVLVV NAGLRLKNLQ DETGSEEMCP  480
RDAVLKLIRK MNPDVFVHAV VNGSFNAPFF ISRFKEAVYH YSALFDMFDT TLPRDNQERI  540
RFEREFYGRE AMNVIACEEA DRVERPETYR QWQVRMVRAG FKQKPVKSDI VDLFRAKLKK  600
WRCHKDFVVD ENSKWLLQGW KGRTLYASSC WVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-432586318374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676794972
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409948.10.0scarecrow-like protein 34
SwissprotP0C8840.0SCL34_ARATH; Scarecrow-like protein 34
TrEMBLA0A078HM600.0A0A078HM60_BRANA; BnaC04g15290D protein
STRINGXP_006409948.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.10.0GRAS family protein