PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676782402

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

MYB_related

Protein Properties

Length: 1274aa MW: 142826 Da PI: 8.0463

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676782402	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.6	2.8e-08	44	77	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 WT+ E e+++da +++G + Wk++a+ + ++R+ 676782402 44 QWTKGELERFYDAYRKHGRD-WKKVAAAVRNNRSV 77 6***************77.*****9999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.17	40	94	IPR017884	SANT domain
SuperFamily	SSF46689	6.08E-8	43	90	IPR009057	Homeodomain-like
Pfam	PF00249	2.6E-6	44	81	IPR001005	SANT/Myb domain
CDD	cd00167	0.00518	45	87	No hit	No description
SMART	SM01135	6.0E-57	585	686	IPR033471	DIRP domain
Pfam	PF06584	3.2E-31	585	685	IPR033471	DIRP domain
SMART	SM00333	0.0062	672	729	IPR002999	Tudor domain
Gene3D	G3DSA:1.10.472.10	1.3E-30	981	1004	IPR013763	Cyclin-like
SuperFamily	SSF47954	2.87E-24	986	1004	IPR013763	Cyclin-like
Gene3D	G3DSA:1.10.472.10	1.3E-30	1045	1120	IPR013763	Cyclin-like
SuperFamily	SSF47954	2.87E-24	1046	1135	IPR013763	Cyclin-like
Pfam	PF00134	5.9E-9	1058	1130	IPR006671	Cyclin, N-terminal
CDD	cd00043	1.89E-15	1059	1146	No hit	No description
SMART	SM00385	7.2E-11	1065	1147	IPR013763	Cyclin-like
Gene3D	G3DSA:1.10.472.10	3.7E-15	1129	1219	IPR013763	Cyclin-like
Pfam	PF16899	2.2E-8	1131	1217	IPR031658	Cyclin, C-terminal domain 2
SuperFamily	SSF47954	1.12E-23	1131	1243	IPR013763	Cyclin-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1274 aa Download sequence Send to blast
MAPSKKSKGV SKRFTKETSP ELDLRNSTKT KDRKKKLTDK LGPQWTKGEL ERFYDAYRKH 60 GRDWKKVAAA VRNNRSVDMV EALFYMNRAY LSLPEGTASV AGLIAMMTDH YSVIEESESE 120 EEGHGASEVP RKYQKRKRVK VPPIDIREDV ISPHSNALTE GCLPFLKLTQ AYGNERRATG 180 KRTPRFLVPS ANPRDDIEEG STPLNKRAKK QLEADDDDDD DDDDDDDELL ALALANVSRR 240 AGRSPYKRRE LKDSTPNVKM SQAKEAQSKY RASSMFENVV RISRDRRHIK GTPERNGALL 300 MDMEGVGTAE VPQKEKNVRF EEAEGDTSDD SGEASSANER LRSKPQKGLV DVKAGGDELE 360 ALLALAELSA LLTPAGLMES ESAAQLKEER VANTRETISS SHNRDKAKQA GPEDSLVHVI 420 SAADNRKPKS AQELVDGNAV SIGELDTSRR KRKPPHNKQS AEDDLKTLIN ARRAGQGPAK 480 QQKTAKTSEE SCSTSDKKIT GPDALVSATQ VSGSGAAMLP KKPPNRRKMS LKKSLQERTK 540 SSETTHNKSD SYEIDPEHEF LKLQKEVSTC LSYPLVRRRC IFEWFYSAID YPWFAKMEFI 600 DYLNHVGLGH VPRLTRLEWS VIKSSLGRPR RFSERFIQEE RDKLKQYRES VRKHYTALRA 660 GAREGLPTDL AQPLSVGNRV IAIHPKTREI RDGKILTVDH NKCNVLFDEL GVELVMDIDC 720 MPLNPLEYMP DGLRRQMDNC LSVSKEAQLS KHPSSDASAP FPTSVVERVD FSMNPPKKQK 780 SLQDDRDRRV STDQSYNTAN SKERRAENEG ALMLRRTSDA QEMEPEMLEI VSGSRSIAQA 840 MVDAAMKAAS TVKDGEDAGN VVQQALDSIG EHQPLFDNSI VSGMKHQYQA NGSLDHHQSR 900 SLSNTGEPMN EGVIGSIKNE TQMASELISS CVSTWLMIQM CTEKQYPPAD VAQVIETAVS 960 SLQPRERERV CVCVEPLQSA MADFQTSTQR AKWIFTPQRL AERYKAANQR AVQLLEKCGT 1020 TQVEVDASGS LTYPTEKGDA GPQSDKKLKP LSVDEERFMR AFYEAKVQEV CSAFEFPHKI 1080 QATALQYFKR FYLQWSVMQH HPKEIMLTCV YAACKIEENH SLEFDLIVYA PYRAIEGFVG 1140 NMESLLKGAT AEADKIMLTD APLLFPPGQL ALAALRIANG VLGVVDFDRY LENIVSQPNY 1200 EHTTLELTKL LDDIESLVKN YKYPSEKDMK HINRKLKSCL GHSSSHDESK KREKRSKHKS 1260 HRSSNDAPSG APIG

Sequence ? help Back to Top

Protein Sequence Length: 1274 aa Download sequence Send to blast

MAPSKKSKGV SKRFTKETSP ELDLRNSTKT KDRKKKLTDK LGPQWTKGEL ERFYDAYRKH  60
GRDWKKVAAA VRNNRSVDMV EALFYMNRAY LSLPEGTASV AGLIAMMTDH YSVIEESESE  120
EEGHGASEVP RKYQKRKRVK VPPIDIREDV ISPHSNALTE GCLPFLKLTQ AYGNERRATG  180
KRTPRFLVPS ANPRDDIEEG STPLNKRAKK QLEADDDDDD DDDDDDDELL ALALANVSRR  240
AGRSPYKRRE LKDSTPNVKM SQAKEAQSKY RASSMFENVV RISRDRRHIK GTPERNGALL  300
MDMEGVGTAE VPQKEKNVRF EEAEGDTSDD SGEASSANER LRSKPQKGLV DVKAGGDELE  360
ALLALAELSA LLTPAGLMES ESAAQLKEER VANTRETISS SHNRDKAKQA GPEDSLVHVI  420
SAADNRKPKS AQELVDGNAV SIGELDTSRR KRKPPHNKQS AEDDLKTLIN ARRAGQGPAK  480
QQKTAKTSEE SCSTSDKKIT GPDALVSATQ VSGSGAAMLP KKPPNRRKMS LKKSLQERTK  540
SSETTHNKSD SYEIDPEHEF LKLQKEVSTC LSYPLVRRRC IFEWFYSAID YPWFAKMEFI  600
DYLNHVGLGH VPRLTRLEWS VIKSSLGRPR RFSERFIQEE RDKLKQYRES VRKHYTALRA  660
GAREGLPTDL AQPLSVGNRV IAIHPKTREI RDGKILTVDH NKCNVLFDEL GVELVMDIDC  720
MPLNPLEYMP DGLRRQMDNC LSVSKEAQLS KHPSSDASAP FPTSVVERVD FSMNPPKKQK  780
SLQDDRDRRV STDQSYNTAN SKERRAENEG ALMLRRTSDA QEMEPEMLEI VSGSRSIAQA  840
MVDAAMKAAS TVKDGEDAGN VVQQALDSIG EHQPLFDNSI VSGMKHQYQA NGSLDHHQSR  900
SLSNTGEPMN EGVIGSIKNE TQMASELISS CVSTWLMIQM CTEKQYPPAD VAQVIETAVS  960
SLQPRERERV CVCVEPLQSA MADFQTSTQR AKWIFTPQRL AERYKAANQR AVQLLEKCGT  1020
TQVEVDASGS LTYPTEKGDA GPQSDKKLKP LSVDEERFMR AFYEAKVQEV CSAFEFPHKI  1080
QATALQYFKR FYLQWSVMQH HPKEIMLTCV YAACKIEENH SLEFDLIVYA PYRAIEGFVG  1140
NMESLLKGAT AEADKIMLTD APLLFPPGQL ALAALRIANG VLGVVDFDRY LENIVSQPNY  1200
EHTTLELTKL LDDIESLVKN YKYPSEKDMK HINRKLKSCL GHSSSHDESK KREKRSKHKS  1260
HRSSNDAPSG APIG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1kxu_A	8e-26	984	1266	12	327	CYCLIN H
6o9l_9	7e-26	984	1266	2	317	Cyclin-H
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676782402

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006394955.1	0.0	protein ALWAYS EARLY 1 isoform X1
Swissprot	Q6A331	0.0	ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBL	A0A3P5YWU4	0.0	A0A3P5YWU4_BRACM; Uncharacterized protein
STRING	Bra009950.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	2e-73	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]