PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676770606 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 209aa MW: 23664.7 Da PI: 9.9458 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.6e-19 | 70 | 125 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rrk+ ++tkeq + Lee F +n++++ ++++eLA+ l+L++rqV vWFqNrRa+ k 676770606 70 RRKKLRLTKEQSHLLEESFIQNHTLTPKQKQELATFLKLSQRQVEVWFQNRRARSK 125 79999*************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 110.7 | 1e-35 | 71 | 159 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLEesF ++++L+p++K+ela+ L+l++rqv+vWFqnrRAR k+k++E+++e+Lkr++ +lke+n+rL++eveeLr+ 676770606 71 RKKLRLTKEQSHLLEESFIQNHTLTPKQKQELATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQTEVEELRA 159 69*************************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.92E-20 | 56 | 126 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.6E-19 | 60 | 125 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.301 | 67 | 127 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.5E-18 | 69 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.46E-17 | 70 | 128 | No hit | No description |
Pfam | PF00046 | 8.6E-17 | 70 | 125 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 102 | 125 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 9.2E-15 | 127 | 170 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.9E-9 | 127 | 161 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MAVSPNSSSL ELTISIPSFS PSHSLPSSGD HMVRDLDINK TPKTEKDRAG IMIGATPHVN 60 ENDGNSGGRR RKKLRLTKEQ SHLLEESFIQ NHTLTPKQKQ ELATFLKLSQ RQVEVWFQNR 120 RARSKLKHTE MECEYLKRWF GSLKEQNRRL QTEVEELRAR KPVSASVLTM CPRCERVTDA 180 ADNESNAVEE GTAPRSQSRM TISSSSSLC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 75 | GRRRKKLRL |
2 | 68 | 74 | RRRKKLR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00226 | DAP | Transfer from AT1G70920 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676770606 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105759.1 | 1e-124 | PREDICTED: homeobox-leucine zipper protein ATHB-X | ||||
Swissprot | Q8GXM7 | 1e-107 | ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X | ||||
TrEMBL | A0A1J3JI87 | 1e-123 | A0A1J3JI87_NOCCA; Homeobox-leucine zipper protein ATHB-X | ||||
STRING | Bra016174.1-P | 1e-123 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13380 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70920.1 | 7e-98 | homeobox-leucine zipper protein 18 |
Publications ? help Back to Top | |||
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