PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676767668
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GeBP
Protein Properties Length: 309aa    MW: 34815.6 Da    PI: 10.3333
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676767668genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57372.57.9e-2363151398
     DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvk.ksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                ++r+w +eDe+++L Gl+d++aktg++p+ ++d+f++f+  +si +k+sk+ql++Kir+LK Kf  +++   +g++  +     +++f lskkiWg+
  676767668  63 INRIW-DEDELTVLNGLVDYQAKTGVEPKTNWDEFHRFLGgGSIAAKFSKDQLLSKIRKLKGKFLVRMQS--QGNDHIL-----SEAFRLSKKIWGQ 151
                67999.68******************************96369*************************99..8888555.....468********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.2E-1664150IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVSLRHLDLS DDSSPSSQSL LPTKSPRKHT SKPPPPSKPV PEQVTKKNKN KKKKNKKLAS  60
SVINRIWDED ELTVLNGLVD YQAKTGVEPK TNWDEFHRFL GGGSIAAKFS KDQLLSKIRK  120
LKGKFLVRMQ SQGNDHILSE AFRLSKKIWG QNDSNHSKTG DQLLSKIRKL KGKFLVRMQS  180
QGNDHILSEA FRLSKKIWGQ NDSNHSKTGE EEEAANHEPL SDNVVAKRDF EGNDDADKSC  240
ALTDAFETMV SPGLSDYQKK SQLQKLMNLG SGKRKELSDE WKELCAEEVK LNIKKFRFSA  300
MLAEAANGR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676767668
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590206.11e-85PREDICTED: uncharacterized protein LOC106298614
TrEMBLA0A0D3CT541e-84A0A0D3CT54_BRAOL; Uncharacterized protein
STRINGBo6g064770.12e-85(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61171741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00270.12e-57DNA-binding storekeeper protein-related transcriptional regulator