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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676764948 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | NAC | ||||||||
Protein Properties | Length: 432aa MW: 48720.5 Da PI: 5.0881 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 119 | 4.4e-37 | 27 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 l+pGfrFhPtdeelv++yLk+kv gk++++ ++i evdiyk+ePwdL +++k++++ewyf+s dkky atgkd+e+ + + + 676764948 27 LAPGFRFHPTDEELVSYYLKRKVLGKPVRF-DAIGEVDIYKHEPWDLAvySRLKTRDQEWYFYSALDKKY----------------ATGKDREIRR-DIQ 108 579************************999.99**************85448899999**********99................4799999999.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 l g+kktLvf++grap+g +t+Wvmheyrl 676764948 109 LLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 138 9***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-47 | 20 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.719 | 27 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-20 | 29 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MGRESVAAAS SPPTATARGT AASATALAPG FRFHPTDEEL VSYYLKRKVL GKPVRFDAIG 60 EVDIYKHEPW DLAVYSRLKT RDQEWYFYSA LDKKYATGKD REIRRDIQLL GMKKTLVFHS 120 GRAPDGLRTN WVMHEYRLVD YEIENNGNLV QDAYVLCRVF HKNNIGPPSG NRYAPFMEEE 180 WADDGVALIP GVDVRVRAEP LPLANGNNQM DQEIQSASKD LININEPPRE TAPMDIELNH 240 QNHQENAPKV QENNNSNHYD EVEEALKLEQ PEEDERPPVC VLNKEAPLPL LQYKRRRQND 300 SNNNSSRTTQ DHCSSTTTTV DNTPTVISSS AAATNTAISA LLEFSLMGIS EKKENPQPPQ 360 KEASPPASLP SPEEKLNDLQ KEIHQMSVER ETFKLEMMSA EAMISILQSR IDALRQENDE 420 LRKNNAKGQA IL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 8e-35 | 26 | 164 | 19 | 170 | NAC domain-containing protein 19 |
3swm_B | 8e-35 | 26 | 164 | 19 | 170 | NAC domain-containing protein 19 |
3swm_C | 8e-35 | 26 | 164 | 19 | 170 | NAC domain-containing protein 19 |
3swm_D | 8e-35 | 26 | 164 | 19 | 170 | NAC domain-containing protein 19 |
3swp_A | 8e-35 | 26 | 164 | 19 | 170 | NAC domain-containing protein 19 |
3swp_B | 8e-35 | 26 | 164 | 19 | 170 | NAC domain-containing protein 19 |
3swp_C | 8e-35 | 26 | 164 | 19 | 170 | NAC domain-containing protein 19 |
3swp_D | 8e-35 | 26 | 164 | 19 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676764948 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013750304.1 | 0.0 | NAC domain-containing protein 71-like isoform X1 | ||||
Refseq | XP_013750305.1 | 0.0 | NAC domain-containing protein 71-like isoform X2 | ||||
Swissprot | Q9SQY0 | 0.0 | NAC52_ARATH; NAC domain containing protein 52 | ||||
TrEMBL | A0A397ZF44 | 0.0 | A0A397ZF44_BRACM; Uncharacterized protein | ||||
STRING | Bo5g137360.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1780 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 0.0 | NAC domain containing protein 50 |
Publications ? help Back to Top | |||
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