PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

ERF

Protein Properties

Length: 288aa MW: 32837.5 Da PI: 5.3803

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676753590	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.1	1e-18	137	187	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++ + kl+g+ 676753590 137 LYRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDRQAFKLRGH 187 59**999.******954...4************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.07E-34	136	196	No hit	No description
Gene3D	G3DSA:3.30.730.10	7.8E-32	137	195	IPR001471	AP2/ERF domain
SMART	SM00380	4.4E-38	137	200	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.67	137	194	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.77E-23	137	195	IPR016177	DNA-binding domain
PRINTS	PR00367	2.6E-11	138	149	IPR001471	AP2/ERF domain
Pfam	PF00847	1.5E-13	138	187	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.6E-11	160	176	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MDFDEELNLC ITKGKNVDPS LTTSPRSMKK MRNPDHRSKP YLPFSSSPSN SMATLPFSLD 60 PTLQTQQQQQ QVEYVPVNQH HDPTMQGQNQ MISFSPQQPQ QQQYMVKYWS DTLNLSPRGR 120 MMMMNQESVQ PYSSTKLYRG VRQRQWGKWV AEIRKPRSRA RLWLGTFDTA EEAAMAYDRQ 180 AFKLRGHNAT LNFPEHFANK EIELHDSTGA LDQDQQQSET PQPNEVNLES KEVAVSDGGV 240 EEGMAEAWFN AITAGWGPES PLWDDLDSSQ FSQSSSSSSA SCPMRPFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-21	136	194	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00458	DAP	Transfer from AT4G28140	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676753590

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189441	1e-151	AC189441.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069M23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009144196.1	1e-153	PREDICTED: ethylene-responsive transcription factor ERF054-like
Refseq	XP_013673941.1	1e-153	ethylene-responsive transcription factor ERF054-like
Swissprot	Q9M0J3	1e-143	ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBL	A0A398AQ55	1e-153	A0A398AQ55_BRACM; Uncharacterized protein
STRING	Bra026280.1-P	1e-152	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2141	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28140.1	1e-139	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]