PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752130
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 292aa    MW: 33939.3 Da    PI: 9.4228
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752130genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.3e-13184275998
                HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE- CS
         B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfr 98 
                  +++++l +p +f++++g++ ee++++ l de+g++W +k+  +k+s++  +  + W  F+++++L     ++F+++  ++ ++ + +v+++r
  676752130 184 TRGSLCQLEIPTTFLKSNGIELEEDQDIELCDENGKKWPLKI--EKHSRGlKFSHDSWLCFCESHKLSKPNKCLFEFVvtSNgTCNRILVRIYR 275
                56889*************98889999****************..*****9656669********************653355566666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-6568IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-6759IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.599102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-15170262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-15172273IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.503176277IPR003340B3 DNA binding domain
CDDcd100178.93E-12177275No hitNo description
SMARTSM010198.6E-13179277IPR003340B3 DNA binding domain
PfamPF023621.0E-10184275IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MVARKDMEFF KVYLPEFSSR ELVIPQAFIN ILEKPLPNKV LLVDEIGRLW YVETKTEDRE  60
ERVVVFSKDG CKKDLVVVTT TAGRSRVTVE KEPVVIKPVD VSIKSERWEG CGKRVIPNRK  120
RVSVKEEPSE FVEVEPEHRR NTRRKVNRDR VDPREMSLVP KKEHKGCEES AYKPKNPHFV  180
RNITRGSLCQ LEIPTTFLKS NGIELEEDQD IELCDENGKK WPLKIEKHSR GLKFSHDSWL  240
CFCESHKLSK PNKCLFEFVV TSNGTCNRIL VRIYRGRLLT IATKNGYQVL AL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651702.11e-144putative B3 domain-containing protein At5g66980
SwissprotQ9FGD21e-108Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLA0A3P6BQY11e-142A0A3P6BQY1_BRACM; Uncharacterized protein
STRINGBo7g064220.11e-142(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-100B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]