PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676752130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | B3 | ||||||||
Protein Properties | Length: 292aa MW: 33939.3 Da PI: 9.4228 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.4 | 5.3e-13 | 184 | 275 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfr 98 +++++l +p +f++++g++ ee++++ l de+g++W +k+ +k+s++ + + W F+++++L ++F+++ ++ ++ + +v+++r 676752130 184 TRGSLCQLEIPTTFLKSNGIELEEDQDIELCDENGKKWPLKI--EKHSRGlKFSHDSWLCFCESHKLSKPNKCLFEFVvtSNgTCNRILVRIYR 275 56889*************98889999****************..*****9656669********************653355566666666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-6 | 5 | 68 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-6 | 7 | 59 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.59 | 9 | 102 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-15 | 170 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-15 | 172 | 273 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.503 | 176 | 277 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.93E-12 | 177 | 275 | No hit | No description |
SMART | SM01019 | 8.6E-13 | 179 | 277 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-10 | 184 | 275 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MVARKDMEFF KVYLPEFSSR ELVIPQAFIN ILEKPLPNKV LLVDEIGRLW YVETKTEDRE 60 ERVVVFSKDG CKKDLVVVTT TAGRSRVTVE KEPVVIKPVD VSIKSERWEG CGKRVIPNRK 120 RVSVKEEPSE FVEVEPEHRR NTRRKVNRDR VDPREMSLVP KKEHKGCEES AYKPKNPHFV 180 RNITRGSLCQ LEIPTTFLKS NGIELEEDQD IELCDENGKK WPLKIEKHSR GLKFSHDSWL 240 CFCESHKLSK PNKCLFEFVV TSNGTCNRIL VRIYRGRLLT IATKNGYQVL AL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676752130 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013651702.1 | 1e-144 | putative B3 domain-containing protein At5g66980 | ||||
Swissprot | Q9FGD2 | 1e-108 | Y5698_ARATH; Putative B3 domain-containing protein At5g66980 | ||||
TrEMBL | A0A3P6BQY1 | 1e-142 | A0A3P6BQY1_BRACM; Uncharacterized protein | ||||
STRING | Bo7g064220.1 | 1e-142 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12802 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 1e-100 | B3 family protein |
Publications ? help Back to Top | |||
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