PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676742986

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

FAR1

Protein Properties

Length: 674aa MW: 76761.7 Da PI: 6.6721

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676742986	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.7	4.1e-23	70	153	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA+e+GF +r+++s ++++++e + ++C++eg++ ++ + ++r+etrtgC+a++++++ + ++w+v++++l+HnH++ 676742986 70 YYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKMAKEAN-----TRRKETRTGCQAMIRLRLIDFDRWKVDQVKLDHNHSFD 153 9*************************************998877.....8999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-20	70	153	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.9E-26	270	363	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.877	553	592	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.4E-6	564	590	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.0E-5	567	594	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence Send to blast
MEEGSPSSEH LVVQGGDDPG DLGIDLAETD CDGLLDEFAS QSNESGKCLT AVAPPATGME 60 FESYDDAYSY YNSYARELGF AIRVKSSWTK RNSKEKRGAV LCCNCEGFKM AKEANTRRKE 120 TRTGCQAMIR LRLIDFDRWK VDQVKLDHNH SFDPERAHNS KSHKKTTASK RKPEPLLHVQ 180 VRTINLYRTL PSDPPISSGE TSDPGHDHSR SPTRLELRGA FRVLQDFFFQ AQLTNPNFFY 240 SMDLSEDGTL RNVFWIESRA RAAYSHFGDV LVLDTTCLSN TYELPLVAFV GVNHHGDSIL 300 LGCGLLADQS SETYVWLLRA WLTCMSGRPP QTFVTEHCKS IQTAVSEVFP RAHHRLSLTH 360 VLQTIFQSVV GLQDPESFRM ALNRVIYGFL KVEEFEVAWE EMIVRFELTN NETIRALFQD 420 REQWAPVYLK DMFLAGALSF RLGNAAAPFI FSGYVHHRTS LGEFLQGYES FLDKKYKGET 480 LRDSESLKSI PELKTAHPYE SQMAKVFTKE IFTRFQEEVS AMSSCFGVTQ VHSNGSASSY 540 VVKEREGEKV RDFEVIYETS AAAQVRCFCV CGGFSFNGYQ CRHVLLLLSH NGLEEVPSQY 600 ILQRWRKDVK RLYVADFGSD RVDIMNPVQW YEHLHRRAMQ VVEQGMRSKE HCGIAWEAFK 660 ESVNKVHLVT EKPS

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence Send to blast

MEEGSPSSEH LVVQGGDDPG DLGIDLAETD CDGLLDEFAS QSNESGKCLT AVAPPATGME  60
FESYDDAYSY YNSYARELGF AIRVKSSWTK RNSKEKRGAV LCCNCEGFKM AKEANTRRKE  120
TRTGCQAMIR LRLIDFDRWK VDQVKLDHNH SFDPERAHNS KSHKKTTASK RKPEPLLHVQ  180
VRTINLYRTL PSDPPISSGE TSDPGHDHSR SPTRLELRGA FRVLQDFFFQ AQLTNPNFFY  240
SMDLSEDGTL RNVFWIESRA RAAYSHFGDV LVLDTTCLSN TYELPLVAFV GVNHHGDSIL  300
LGCGLLADQS SETYVWLLRA WLTCMSGRPP QTFVTEHCKS IQTAVSEVFP RAHHRLSLTH  360
VLQTIFQSVV GLQDPESFRM ALNRVIYGFL KVEEFEVAWE EMIVRFELTN NETIRALFQD  420
REQWAPVYLK DMFLAGALSF RLGNAAAPFI FSGYVHHRTS LGEFLQGYES FLDKKYKGET  480
LRDSESLKSI PELKTAHPYE SQMAKVFTKE IFTRFQEEVS AMSSCFGVTQ VHSNGSASSY  540
VVKEREGEKV RDFEVIYETS AAAQVRCFCV CGGFSFNGYQ CRHVLLLLSH NGLEEVPSQY  600
ILQRWRKDVK RLYVADFGSD RVDIMNPVQW YEHLHRRAMQ VVEQGMRSKE HCGIAWEAFK  660
ESVNKVHLVT EKPS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676742986

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006389743.1	0.0	protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A087HJU8	0.0	A0A087HJU8_ARAAL; Uncharacterized protein
STRING	A0A087HJU8	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14233	20	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]