PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676742986 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | FAR1 | ||||||||
Protein Properties | Length: 674aa MW: 76761.7 Da PI: 6.6721 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 73.7 | 4.1e-23 | 70 | 153 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA+e+GF +r+++s ++++++e + ++C++eg++ ++ + ++r+etrtgC+a++++++ + ++w+v++++l+HnH++ 676742986 70 YYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKMAKEAN-----TRRKETRTGCQAMIRLRLIDFDRWKVDQVKLDHNHSFD 153 9***************************************998877.....8999*******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-20 | 70 | 153 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.9E-26 | 270 | 363 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.877 | 553 | 592 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 6.4E-6 | 564 | 590 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.0E-5 | 567 | 594 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
MEEGSPSSEH LVVQGGDDPG DLGIDLAETD CDGLLDEFAS QSNESGKCLT AVAPPATGME 60 FESYDDAYSY YNSYARELGF AIRVKSSWTK RNSKEKRGAV LCCNCEGFKM AKEANTRRKE 120 TRTGCQAMIR LRLIDFDRWK VDQVKLDHNH SFDPERAHNS KSHKKTTASK RKPEPLLHVQ 180 VRTINLYRTL PSDPPISSGE TSDPGHDHSR SPTRLELRGA FRVLQDFFFQ AQLTNPNFFY 240 SMDLSEDGTL RNVFWIESRA RAAYSHFGDV LVLDTTCLSN TYELPLVAFV GVNHHGDSIL 300 LGCGLLADQS SETYVWLLRA WLTCMSGRPP QTFVTEHCKS IQTAVSEVFP RAHHRLSLTH 360 VLQTIFQSVV GLQDPESFRM ALNRVIYGFL KVEEFEVAWE EMIVRFELTN NETIRALFQD 420 REQWAPVYLK DMFLAGALSF RLGNAAAPFI FSGYVHHRTS LGEFLQGYES FLDKKYKGET 480 LRDSESLKSI PELKTAHPYE SQMAKVFTKE IFTRFQEEVS AMSSCFGVTQ VHSNGSASSY 540 VVKEREGEKV RDFEVIYETS AAAQVRCFCV CGGFSFNGYQ CRHVLLLLSH NGLEEVPSQY 600 ILQRWRKDVK RLYVADFGSD RVDIMNPVQW YEHLHRRAMQ VVEQGMRSKE HCGIAWEAFK 660 ESVNKVHLVT EKPS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676742986 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006389743.1 | 0.0 | protein FAR1-RELATED SEQUENCE 8 | ||||
Swissprot | Q9S793 | 0.0 | FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | A0A087HJU8 | 0.0 | A0A087HJU8_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HJU8 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14233 | 20 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 0.0 | FAR1-related sequence 8 |
Publications ? help Back to Top | |||
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