PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 676739220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 680aa MW: 74523.5 Da PI: 6.7383 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.8 | 1.2e-28 | 202 | 255 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+ 676739220 202 KPRVVWSVELHQQFVAAVNQL-GVDKAVPKKILEMMNVPGLTRENVASHLQKYRI 255 79*******************.********************************7 PP | |||||||
2 | Response_reg | 74.9 | 3.1e-25 | 21 | 129 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+p+ +++l+++l y +v+ + +e al ll++++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ +l+ + Ga 676739220 21 VLVVDDDPTCLMILERMLMTCLY-RVTKCNRAELALSLLRKNKngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKSVVLKGVTHGAV 115 89*********************.***************999999**********************6644.8************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +e+l + 676739220 116 DYLIKPVRIEALKN 129 **********9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.2E-190 | 2 | 672 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 2.56E-34 | 18 | 143 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.0E-40 | 18 | 164 | No hit | No description |
SMART | SM00448 | 3.6E-29 | 19 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 40.626 | 20 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 6.4E-22 | 21 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.12E-26 | 22 | 134 | No hit | No description |
PROSITE profile | PS51294 | 11.323 | 199 | 258 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.53E-20 | 200 | 259 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.3E-30 | 201 | 260 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-24 | 202 | 255 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-8 | 204 | 254 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0071368 | Biological Process | cellular response to cytokinin stimulus | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 680 aa Download sequence Send to blast |
MLNPGQGRGP DSDPFPAGLR VLVVDDDPTC LMILERMLMT CLYRVTKCNR AELALSLLRK 60 NKNGFDIVIS DVHMPDMDGF KLLEHVGLEM DLPVIMMSAD DSKSVVLKGV THGAVDYLIK 120 PVRIEALKNI WQHVVRKKRN VSEQSGSVEE TGGGDRQQQR DDADNNSSSA NNEGNWRTSR 180 KRKEEEVDEQ GEDKEDTSSL KKPRVVWSVE LHQQFVAAVN QLGVDKAVPK KILEMMNVPG 240 LTRENVASHL QKYRIYLRRL GGVSQHQGNM NHSFMNGQDP NYAPLSTLNG YDLQALAVAG 300 QLPAQSLAQL QAAGLGRPSL TKPGMSVPPH VDQRSIFNFE NPKIRFGDGH GHGQTMNDGG 360 ANKQMNLLHG VPTGMEPKQF PSGGHMRMQQ QQINGLRAAG LNVQSSGMLR PVGGPSMLSS 420 LGQQQPMLAS TVSRRSDLTD ALAGRNSIPE ISSSSNRVLP ATHSVFNNFP SDLTRNSFPL 480 ASAPGISVSY QEEVNSSDAK GGSSAATVTT TAGFGNPSYD MLNNFPQQQQ HNSNNNSRLS 540 DWDLRNIGMV FNSHQDTAAA AAAPSAAYSS SEAYSSSSTQ RKRREADLPV VAEHVQNHHQ 600 QQQLPSRSLN YMNQIYMNGG SVRVKSERVA ETVTCPPTTT LFPEQYNQED LMSALLKQEG 660 LPPVDNEFEF DGYSIDNIPV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 8e-22 | 198 | 260 | 1 | 63 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00054 | PBM | Transfer from AT4G16110 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 676739220 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ473521 | 0.0 | DQ473521.1 Arabidopsis thaliana ARR2 (ARR2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006286049.2 | 0.0 | two-component response regulator ARR2 | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | D7MA81 | 0.0 | D7MA81_ARALL; Two-component response regulator | ||||
STRING | Cagra.0053s0018.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2403 | 27 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16110.1 | 0.0 | response regulator 2 |