PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676728286

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NAC

Protein Properties

Length: 286aa MW: 32969 Da PI: 6.2883

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676728286	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.8	3e-51	6	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtd el+ +yL +k+eg ++el evi+e+++yk++Pw+Lp k + +++ ew+fF++rdkky++g r+nratksgyWkatgkd++++++ g 676728286 6 LPPGFRFHPTDAELIGYYLSRKLEGLEIEL-EVIPEINLYKLDPWELPdKsFLPNRDMEWFFFCPRDKKYPNGFRTNRATKSGYWKATGKDRKITCNsLG 104 79**************************.99**********96435556888*********************************98556 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +g +ktLvfy+grap g++t+W+mheyrl 676728286 105 VITGYRKTLVFYEGRAPLGNRTNWFMHEYRL 135 779************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-59	3	159	IPR003441	NAC domain
PROSITE profile	PS51005	57.442	6	159	IPR003441	NAC domain
Pfam	PF02365	3.0E-28	7	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008283	Biological Process	cell proliferation
GO:0071365	Biological Process	cellular response to auxin stimulus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MGSSCLPPGF RFHPTDAELI GYYLSRKLEG LEIELEVIPE INLYKLDPWE LPDKSFLPNR 60 DMEWFFFCPR DKKYPNGFRT NRATKSGYWK ATGKDRKITC NSLGVITGYR KTLVFYEGRA 120 PLGNRTNWFM HEYRLCEDDL PQKSPNFKGG FVLCRVIKKN GVKTKTLKNK NEQEIGSGCS 180 SLVASPCRDE TMQFQSFKPS FTTNEESSSI WISPEFILDS SKDYSQMQEG ASEYFPSCHF 240 PVNAASSSYL NVDQEIQDID QSVQTGSWPY YEYDQTGSFG YSNFYR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-50	6	165	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-50	6	165	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-50	6	165	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-50	6	165	17	171	NO APICAL MERISTEM PROTEIN
4dul_A	3e-50	6	165	17	171	NAC domain-containing protein 19
4dul_B	3e-50	6	165	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00439	DAP	Transfer from AT4G17980	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676728286

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL021889	2e-71	AL021889.2 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K21 (ESSA project).
GenBank	AL161547	2e-71	AL161547.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47.
GenBank	CP002687	2e-71	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013596725.1	1e-174	PREDICTED: NAC domain-containing protein 86
Refseq	XP_013705749.1	1e-174	NAC domain-containing protein 71
Swissprot	O49697	1e-136	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A0D3DER5	1e-172	A0A0D3DER5_BRAOL; Uncharacterized protein
TrEMBL	A0A3N6QYB1	1e-172	A0A3N6QYB1_BRACR; Uncharacterized protein
TrEMBL	A0A3P6EJ92	1e-172	A0A3P6EJ92_BRAOL; Uncharacterized protein
STRING	Bo7g105630.1	1e-173	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2151	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-138	NAC domain containing protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]