PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721344
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WOX
Protein Properties Length: 260aa    MW: 29048.1 Da    PI: 5.7764
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721344genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-2092152257
                T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                r+R+t+t+ ql++Le+ F + + +ps++++++++++l    ++ +++V++WFqNrRa+ k+
  676721344  92 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKDITEELsqhgQIADQNVYNWFQNRRARSKR 152
                89*****************99**************************************97 PP
2Wus_type_Homeobox104.47.5e-3491154265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i d+NV++WFQNr+aR+++kq
          676721344  91 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIADQNVYNWFQNRRARSKRKQ 154
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.41488153IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-1688155IPR009057Homeodomain-like
SMARTSM003894.3E-1390157IPR001356Homeobox domain
SuperFamilySSF466892.31E-1691154IPR009057Homeodomain-like
PfamPF000464.0E-1892152IPR001356Homeobox domain
CDDcd000861.55E-1192154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEWDNQQQPN NHHSSNLQGI DVSGGSGSGG MYVKVMTDEQ LETLRKQIAI YATICERLVE  60
MHKTLTSQQD LAGGRLGGLY ADPTIGHKMT ARQRWTPTPV QLQILERIFD QGTGTPSKQK  120
IKDITEELSQ HGQIADQNVY NWFQNRRARS KRKQHGVGSS NNNNGESEVE TETDTLNEKR  180
KIPESLLVLP DGNNSNNAIG TTTTSPRPED HLCFQSPEMS SDLHLLGVLS NQRDEHLVGK  240
MGLSESYNLY DHVEDYGMSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676721344
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0482680.0AY048268.1 Arabidopsis thaliana AT4g35550/F8D20_60 mRNA, complete cds.
GenBankAY2514040.0AY251404.1 Arabidopsis thaliana WOX13 protein mRNA, complete cds.
GenBankBT0005380.0BT000538.1 Arabidopsis thaliana homeodomain - like protein (At4g35550/F8D20_60) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013643268.11e-153WUSCHEL-related homeobox 13
SwissprotO817881e-148WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A3P6A3I01e-153A0A3P6A3I0_BRACM; Uncharacterized protein
STRINGBo7g117480.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46202851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-134WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]