PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

MYB_related

Protein Properties

Length: 1201aa MW: 135537 Da PI: 7.7843

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676709732	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27	1e-08	92	127	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e+++++ +++G++ Wk++a+ + R+++++ 676709732 92 QWSKEELERFYEGYRKFGKE-WKKVAAFVH-SRSAEMV 127 6*****************.******9.9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.0E-4	89	137	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.8E-10	89	138	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-7	92	127	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-5	92	128	IPR009057	Homeodomain-like
CDD	cd00167	4.13E-5	93	135	No hit	No description
SMART	SM01135	1.5E-59	658	759	IPR033471	DIRP domain
Pfam	PF06584	6.0E-30	658	758	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1201 aa Download sequence Send to blast
MAPSRSKKSK YKKTPRAKAV SPHKEEESMS KTKQRVSCFA ECFIQVVDLI KGGDFVLHWV 60 SNVLPISFCD KLYQLPLFYM QKRKLSDMLG PQWSKEELER FYEGYRKFGK EWKKVAAFVH 120 SRSAEMVEAL YTMNKAYLSL PEGTASVVGL TAMMTDHYSV LHGGGSDSEQ EKNETLRSAS 180 KRSKVKSSDH PSIGLEGLSD RLQFRSSSGY LPSLKKRRTE TVPRAVGKRT PRIPVSYTPE 240 KDTRERYLSP VKRCRNQKGD DTDDDMEHEI ALALTEASQR GGSTKKPHTP NRKAKTYSPD 300 NKGERMKYGL IDFDIQRADI DLAIAKLRAT DMEDARCEPS LGSTEAENVD NSGGRNELTH 360 REGSSAMELE QKGKKYYRRR LGIKEDDAKE ACSGTDEAQS LGTLDDKFKL EGNGKFLKFT 420 YRSSRRKSKK SLFTADEDTA CDALQTLADL SLMMPETATD TESSVQAEEK RAGKAYVSDY 480 KEIDPASISK RGSLRNSKQR RSVSNDICDT EPERKSPSSS VIRKGRQKAS PAKVPKDELA 540 AISQLIEPSK NKGIGEENKP VGRGKRSASI RNPHEKKSVK PQDRTSSSNN MVEEDESASS 600 TAATKKEVNL PTKVRSRRKI ITEKPLTIND VKNSEILEKF SHCISSFRAR RWCLFEWFYS 660 AIDYPWFARQ EFVEYLDHVG LGHVPRLTRV EWGVIRSSLG KPRRFSQQFL KEEKEKLYLY 720 RDSVRKHYDE LNTGVREGLP MDLARPLNVS QRVISVHPKS REIHDGSVLT VDHCRYRIQF 780 DHPELGVEFV KDTECMPLNP LENMPASLAK HYVFSNYHSP NPSEEKMHER VKESMPEGDL 840 KLSCETGQPL ISPNYNISNS LKQEKVDISS SDPQAQNGVD EALDVQLFNS QPSSEGIGHL 900 HAKEADVQAL SELTRALDKK ELVLRELKYM NNEVVENEKD GHNALKDSES FKKQYAAVLF 960 QLSEINEQAR VYEGNMRVIL LSLLHTAPEV SHVSICTGFI GPSWLEAKEY LPGEWEPDSQ 1020 LTDVDNYASD TNGFHVSEIV DSSRVKARKM VYRAIQALSL LRKDENNVVN IEEAIDFVNN 1080 QLSVDETEGS SVQQTQAAQD QRLPSTPNPP SSTQHADDSH LNPVDQNDLQ VPSELVSRCM 1140 ATLLMIQRCT ERQFPPSEVA QVLDSAVASL QPCCSQNLPI YTEIQKCMGI IRNQILALVP 1200 S

Sequence ? help Back to Top

Protein Sequence Length: 1201 aa Download sequence Send to blast

MAPSRSKKSK YKKTPRAKAV SPHKEEESMS KTKQRVSCFA ECFIQVVDLI KGGDFVLHWV  60
SNVLPISFCD KLYQLPLFYM QKRKLSDMLG PQWSKEELER FYEGYRKFGK EWKKVAAFVH  120
SRSAEMVEAL YTMNKAYLSL PEGTASVVGL TAMMTDHYSV LHGGGSDSEQ EKNETLRSAS  180
KRSKVKSSDH PSIGLEGLSD RLQFRSSSGY LPSLKKRRTE TVPRAVGKRT PRIPVSYTPE  240
KDTRERYLSP VKRCRNQKGD DTDDDMEHEI ALALTEASQR GGSTKKPHTP NRKAKTYSPD  300
NKGERMKYGL IDFDIQRADI DLAIAKLRAT DMEDARCEPS LGSTEAENVD NSGGRNELTH  360
REGSSAMELE QKGKKYYRRR LGIKEDDAKE ACSGTDEAQS LGTLDDKFKL EGNGKFLKFT  420
YRSSRRKSKK SLFTADEDTA CDALQTLADL SLMMPETATD TESSVQAEEK RAGKAYVSDY  480
KEIDPASISK RGSLRNSKQR RSVSNDICDT EPERKSPSSS VIRKGRQKAS PAKVPKDELA  540
AISQLIEPSK NKGIGEENKP VGRGKRSASI RNPHEKKSVK PQDRTSSSNN MVEEDESASS  600
TAATKKEVNL PTKVRSRRKI ITEKPLTIND VKNSEILEKF SHCISSFRAR RWCLFEWFYS  660
AIDYPWFARQ EFVEYLDHVG LGHVPRLTRV EWGVIRSSLG KPRRFSQQFL KEEKEKLYLY  720
RDSVRKHYDE LNTGVREGLP MDLARPLNVS QRVISVHPKS REIHDGSVLT VDHCRYRIQF  780
DHPELGVEFV KDTECMPLNP LENMPASLAK HYVFSNYHSP NPSEEKMHER VKESMPEGDL  840
KLSCETGQPL ISPNYNISNS LKQEKVDISS SDPQAQNGVD EALDVQLFNS QPSSEGIGHL  900
HAKEADVQAL SELTRALDKK ELVLRELKYM NNEVVENEKD GHNALKDSES FKKQYAAVLF  960
QLSEINEQAR VYEGNMRVIL LSLLHTAPEV SHVSICTGFI GPSWLEAKEY LPGEWEPDSQ  1020
LTDVDNYASD TNGFHVSEIV DSSRVKARKM VYRAIQALSL LRKDENNVVN IEEAIDFVNN  1080
QLSVDETEGS SVQQTQAAQD QRLPSTPNPP SSTQHADDSH LNPVDQNDLQ VPSELVSRCM  1140
ATLLMIQRCT ERQFPPSEVA QVLDSAVASL QPCCSQNLPI YTEIQKCMGI IRNQILALVP  1200
S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676709732

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ583497	0.0	AJ583497.1 Arabidopsis thaliana mRNA for always early 3 protein (Ataly3 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013743122.1	0.0	protein ALWAYS EARLY 3-like
Refseq	XP_022575260.1	0.0	protein ALWAYS EARLY 3-like
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A078HLZ4	0.0	A0A078HLZ4_BRANA; BnaA05g19710D protein
STRING	Bra031282.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12714	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]