PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 497288 | ||||||||
Common Name | ARALYDRAFT_497288 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WOX | ||||||||
Protein Properties | Length: 349aa MW: 39898.5 Da PI: 7.8446 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.7 | 7.5e-22 | 75 | 134 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t++ql++Leel+++ +r+psa+++++++++l +++ ++V++WFqN++a+e++ 497288 75 SRWNPTPDQLRVLEELYRQgTRTPSADHIQQITAQLrrygKIEGKNVFYWFQNHKARERQ 134 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 117.9 | 4.5e-38 | 74 | 136 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+Ptp+Q+++Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ 497288 74 SSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKR 136 79***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.1E-5 | 72 | 139 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.25E-12 | 75 | 140 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.5E-19 | 75 | 134 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-9 | 75 | 134 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.11E-6 | 76 | 136 | No hit | No description |
PROSITE profile | PS50071 | 10.867 | 80 | 135 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MWTMGYNEGG GDSFNGGRKL RPLIPRLSSC PTAAVNTNSD HRFNMAVVTM TAEQNKRELM 60 MLNSEPQHPP VMVSSRWNPT PDQLRVLEEL YRQGTRTPSA DHIQQITAQL RRYGKIEGKN 120 VFYWFQNHKA RERQKRRRQM EAGHEESVFS TTSLVSNHGF DKKDPSGYKV EQSKNWICSI 180 GCDTQPEKPS HDHHLEEPAN IRVERNGRCG GDERRSVLGI NATWQMMQLP PGFYPSPHHH 240 HQRNLILNST TVSSNMSNSN ITVSAAKDTV TISPVFLRTR EAANTETSRR NCDDNKDQER 300 DCSNGEPDHQ EQTLELFPLR KEGFCSDGEK EKEINSIHCF YEFLPMKN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 497288 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY251394 | 0.0 | AY251394.1 Arabidopsis thaliana WOX1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002862807.1 | 0.0 | WUSCHEL-related homeobox 1 isoform X1 | ||||
Swissprot | Q6X7K0 | 0.0 | WOX1_ARATH; WUSCHEL-related homeobox 1 | ||||
TrEMBL | D7MWL7 | 0.0 | D7MWL7_ARALL; WOX1 protein | ||||
STRING | fgenesh2_kg.143__1__AT3G18010.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7397 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 0.0 | WUSCHEL related homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | 497288 |
Entrez Gene | 9298884 |
Publications ? help Back to Top | |||
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