PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 496902 | ||||||||
Common Name | ARALYDRAFT_496902 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 333aa MW: 38475.9 Da PI: 6.5812 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.6 | 2.7e-19 | 12 | 105 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffkv+ ++s+ lv+p f+ ++ ++ke +k+ l de gr W v+ + + + +r ++++kGW++F++++ L+ gDf+vF++dg+s+f v++f 496902 12 FFKVF--LPEFSSHELVIPPAFI-DI-LDKELPKEAFLVDEIGRLWCVETKTEDTEERfcVLFKKGWESFANDQSLEFGDFLVFRYDGDSRF--SVTIFA 105 88999..889999**********.66.457899*****************887777778999**************************9999..888886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.888 | 10 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.7E-22 | 11 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-21 | 11 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.6E-17 | 12 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.37E-17 | 12 | 104 | No hit | No description |
SMART | SM01019 | 1.5E-20 | 12 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.4E-14 | 213 | 313 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.22E-14 | 214 | 302 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.066 | 218 | 317 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.32E-7 | 219 | 313 | No hit | No description |
SMART | SM01019 | 4.5E-10 | 221 | 317 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 333 aa Download sequence Send to blast |
MVEETAGKDL EFFKVFLPEF SSHELVIPPA FIDILDKELP KEAFLVDEIG RLWCVETKTE 60 DTEERFCVLF KKGWESFAND QSLEFGDFLV FRYDGDSRFS VTIFAKDGCK KDIGVVTTTD 120 RSRVSVDEKE PVDISTEPEL RKDCGHRINQ KRKRDSVNED PRVMVNNKPD YVSTNKTKPE 180 HREKTQRTVN RAGDPCDISW CPEKEHNGFE ESVYKPKHPH FLRNITIASL QKLEIPLTFL 240 RSNGIELEEE VGLCDENGKK WPLKIVNHGR GVKFSHESWL CFCKSHNMML THKCLFEFIV 300 PSNGRCNEIQ VRIVSGRLPT TMTRHKYQVL AM* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 496902 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB026640 | 1e-172 | AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10. | |||
GenBank | CP002688 | 1e-172 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002866723.1 | 0.0 | putative B3 domain-containing protein At5g66980 | ||||
Swissprot | Q9FGD2 | 0.0 | Y5698_ARATH; Putative B3 domain-containing protein At5g66980 | ||||
TrEMBL | D7MLD4 | 0.0 | D7MLD4_ARALL; Transcriptional factor B3 family protein | ||||
STRING | fgenesh2_kg.8__2718__AT5G66980.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12802 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66980.1 | 0.0 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 496902 |
Entrez Gene | 9302795 |
Publications ? help Back to Top | |||
---|---|---|---|
|