PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 490447
Common NameARALYDRAFT_490447
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 301aa    MW: 32323.7 Da    PI: 7.9079
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
490447genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.6e-31131189259
             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
             +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dpk++++tY+ eHnh+
  490447 131 SDVWAWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPKMFIVTYTAEHNHP 189
             69************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-30120191IPR003657WRKY domain
PROSITE profilePS5081136.77125191IPR003657WRKY domain
SuperFamilySSF1182903.92E-26127191IPR003657WRKY domain
SMARTSM007748.4E-36130190IPR003657WRKY domain
PfamPF031067.1E-26132189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MADDWDLHAV VRGCSAVSSS ATNTTTTVYS GGVSSHTKPI FAVGRQSNAV SFGEFRDLYT  60
PFTQESVVSS FSCLNYPEEP KKPQNQKRPL SLSASSGSVT SKPTGSNTSR SKRRKIQHKK  120
VCHVAAEALN SDVWAWRKYG QKPIKGSPYP RGYYRCSTSK GCLARKQVER NRSDPKMFIV  180
TYTAEHNHPA PTHRNSLAGS TRQKPSDQPT TKSPTTTIGT YSSSPVTSAD EFVLPVEDLA  240
VGDLDGDEDL LSLSDTVVSD DFFDGLEEFA AGDSFSGNSA PASFDLSWVV NSAATATGGI  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-201321921880Disease resistance protein RRS1
5w3x_D1e-201321921880Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap490447
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423920.0AF442392.1 Arabidopsis thaliana WRKY transcription factor 22 (WRKY22) mRNA, complete cds.
GenBankAY0459090.0AY045909.1 Arabidopsis thaliana putative DNA-binding protein (At4g01250) mRNA, complete cds.
GenBankAY0794040.0AY079404.1 Arabidopsis thaliana putative DNA-binding protein (At4g01250) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872898.10.0WRKY transcription factor 22
SwissprotO046090.0WRK22_ARATH; WRKY transcription factor 22
TrEMBLD7M4X40.0D7M4X4_ARALL; WRKY transcription factor 22
STRINGfgenesh2_kg.6__3581__AT4G01250.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78102741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-159WRKY family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  4. Kloth KJ, et al.
    AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling.
    J. Exp. Bot., 2016. 67(11): p. 3383-96
    [PMID:27107291]
  5. Camborde L, et al.
    Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy.
    Nat Protoc, 2017. 12(9): p. 1933-1950
    [PMID:28837131]
  6. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]