![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 479444 | ||||||||
Common Name | ARALYDRAFT_479444 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 433aa MW: 46558 Da PI: 10.1544 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.8 | 2.4e-13 | 354 | 406 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +r+rr++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+k+ e+ ++ + 479444 354 RRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKTNQELQKKQAEMVEMQK 406 69***************************************976555544433 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.9E-11 | 350 | 411 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.726 | 352 | 401 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.9E-11 | 354 | 407 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 4.28E-24 | 354 | 401 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.4E-13 | 354 | 403 | No hit | No description |
SuperFamily | SSF57959 | 5.34E-10 | 354 | 403 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 357 | 372 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900057 | Biological Process | positive regulation of leaf senescence | ||||
GO:1903648 | Biological Process | positive regulation of chlorophyll catabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 433 aa Download sequence Send to blast |
MGTHINFNNL GGGGHPGGEG SSNQMKPTGS VVMPLARQSS VYSLTFDELQ NTLGGPGKDF 60 GSMNMDELLK SIWTAEEAQG LAMTSSSAAT AVAQPGTGIP GGNLQRQGSL TLPRTISQKT 120 VDEVWKCLIT KDGNMGSSSG GGGESNALPG RQQTLGEMTL EEFLFRAGVV REDNCAQQMG 180 QVNGNNNNNG FYGNSTAAGG FGFGFDQPNQ NSISFNGNND SIIMNQPPGL GLKVGGTMLQ 240 QQQQQQLLQQ QQQQQLQQLN QPHPQQRLPQ IIFPKQTNVA FSSPVNIVNK GFAGAANNSI 300 NNSNGLASFG GTGVTVAATS PGTSSAENNS LSPVPYVLNR GRRSNTGLEK VIERRQRRMI 360 KNRESAARSR ARKQAYTLEL EAEIEKLKKT NQELQKKQAE MVEMQKNELK ESSKQPWGSK 420 RQCLRRTLTG PW* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16463099}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 479444 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB017161 | 0.0 | AB017161.1 Arabidopsis thaliana mRNA for ABA-responsive element binding protein 2 (AREB2), complete cds. | |||
GenBank | AF093547 | 0.0 | AF093547.1 Arabidopsis thaliana clone 19 abscisic acid responsive elements-binding factor (ABRE) mRNA, partial cds. | |||
GenBank | AY050897 | 0.0 | AY050897.1 Arabidopsis thaliana putative abscisic acid responsive elements-binding factor (At3g19290) mRNA, complete cds. | |||
GenBank | AY091298 | 0.0 | AY091298.1 Arabidopsis thaliana putative abscisic acid responsive elements-binding factor (At3g19290) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020887153.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X2 | ||||
Swissprot | Q9M7Q2 | 0.0 | AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7 | ||||
TrEMBL | D7L9X6 | 0.0 | D7L9X6_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.3__2145__AT3G19290.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM734 | 27 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19290.1 | 0.0 | ABRE binding factor 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 479444 |
Entrez Gene | 9321372 |
Publications ? help Back to Top | |||
---|---|---|---|
|