PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

474101

Common Name

ABF1, ARALYDRAFT_474101

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 396aa MW: 42888.9 Da PI: 9.6156

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
474101	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44	4.7e-14	316	373	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk.evaklks 61 +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+k+ e+ k + ++lk 474101 316 RRQKRMIKNRESAARSRARKQAYTLELEAEIESLKQVNQDLQKKQAEIMKtQNSELKE 373 79***************************************88766665514555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.2E-13	312	377	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.415	314	365	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.9E-12	316	373	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.43E-22	316	367	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.0E-13	316	373	No hit	No description
SuperFamily	SSF57959	2.88E-10	316	365	No hit	No description
PROSITE pattern	PS00036	0	319	334	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MGTHIDFNNL GGDLSGGNEC NTNQSKPLVR QSSLFSLTFD ELQSTLGEPG KDFGSMNIDE 60 LLKNIWTTED TQAIMTATSS VAAARPSGCV PGGNALQRQG SLTLPRTLIQ KTVDEVWKYL 120 NSKEGSNGNT GTDAPERQQT LGEMTLEDFL LRAGVVKEDN AQQNENSSTG FYANNGAAGL 180 GFGFGQPNQN SISFNGNNNS MIMNKAPGLG LKVGGTMQQQ PHQQQLQQPH QRLPPTIFPK 240 QTNVTFAAPV NMVNRGLFES GADGPVNSNM GGAGATVTAT SPGTSSAENN AWSSPVPYVF 300 GRARRSNTGL EKVVERRQKR MIKNRESAAR SRARKQAYTL ELEAEIESLK QVNQDLQKKQ 360 AEIMKTQNSE LKESSKQPPL LAKRQCLRRT LTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MGTHIDFNNL GGDLSGGNEC NTNQSKPLVR QSSLFSLTFD ELQSTLGEPG KDFGSMNIDE  60
LLKNIWTTED TQAIMTATSS VAAARPSGCV PGGNALQRQG SLTLPRTLIQ KTVDEVWKYL  120
NSKEGSNGNT GTDAPERQQT LGEMTLEDFL LRAGVVKEDN AQQNENSSTG FYANNGAAGL  180
GFGFGQPNQN SISFNGNNNS MIMNKAPGLG LKVGGTMQQQ PHQQQLQQPH QRLPPTIFPK  240
QTNVTFAAPV NMVNRGLFES GADGPVNSNM GGAGATVTAT SPGTSSAENN AWSSPVPYVF  300
GRARRSNTGL EKVVERRQKR MIKNRESAAR SRARKQAYTL ELEAEIESLK QVNQDLQKKQ  360
AEIMKTQNSE LKESSKQPPL LAKRQCLRRT LTGPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00087	SELEX	Transfer from AT1G49720	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	474101

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF093544	0.0	AF093544.1 Arabidopsis thaliana clone 1 abscisic acid responsive elements-binding factor (ABRE) mRNA, complete cds.
GenBank	AK226983	0.0	AK226983.1 Arabidopsis thaliana mRNA for abscisic acid responsive elements-binding factor, complete cds, clone: RAFL09-41-C22.
GenBank	BT008575	0.0	BT008575.1 Arabidopsis thaliana clone U19471 putative abscisic acid responsive elements-binding factor (At1g49720) mRNA, complete cds.
GenBank	BT008647	0.0	BT008647.1 Arabidopsis thaliana clone RAFL09-77-C02 (R19471) putative abscisic acid responsive elements-binding factor (At1g49720) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020866720.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 4 isoform X1
Refseq	XP_020866721.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 4 isoform X1
Refseq	XP_020866722.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 4 isoform X1
Swissprot	Q9M7Q5	0.0	AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBL	D7KF13	0.0	D7KF13_ARALL; Abscisic acid responsive element-binding factor 1
STRING	fgenesh2_kg.1__4055__AT1G49720.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	0.0	abscisic acid responsive element-binding factor 1

Link Out ? help Back to Top
Phytozome	474101
Entrez Gene	9330275

Publications ? help Back to Top
Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877]