PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462966280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | CAMTA | ||||||||
Protein Properties | Length: 776aa MW: 85632.1 Da PI: 6.6211 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 165.6 | 8.4e-52 | 32 | 147 | 3 | 117 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 e +rw +++ei+a+L+n++k++++ ++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yYa++e++p+f rrcywl 462966280 32 AEaASRWFRPNEIYAVLANHAKFQVVPQPIDKPVSGTVVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEEKVHVYYARGEDDPNFFRRCYWL 131 44489*********************************************************************************************** PP CG-1 102 Leeelekivlvhylev 117 L++ele+ivlvhy+++ 462966280 132 LDKELERIVLVHYRQT 147 *************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 73.891 | 27 | 153 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 6.6E-63 | 30 | 148 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 3.3E-44 | 34 | 146 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 3.5E-12 | 378 | 464 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 1.2E-4 | 379 | 463 | IPR002909 | IPT domain |
SuperFamily | SSF48403 | 1.37E-17 | 523 | 674 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.02E-17 | 542 | 670 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 2.6E-18 | 562 | 710 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 18.802 | 578 | 682 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.4E-8 | 584 | 674 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 6.3E-6 | 611 | 640 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.808 | 611 | 643 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 270 | 650 | 679 | IPR002110 | Ankyrin repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 776 aa Download sequence Send to blast |
MAGGASGRDP LVASEIHGFL TCADLNFEKL MAEAASRWFR PNEIYAVLAN HAKFQVVPQP 60 IDKPVSGTVV LYDRKVVRNF RKDGHNWKKK KDGKTVQEAH EKLKIGNEEK VHVYYARGED 120 DPNFFRRCYW LLDKELERIV LVHYRQTSEE NTIPPPNTEP GVAEMPPINL IHYSSPLTST 180 YSASARTEHS CAAAAAPEEI NSHRGGAISC ESDDPESSLE LFWADLLESS MKNDTSVCGG 240 SLTSNQHAKY GTGDSGNNNF VSTNATNNVI FSSTVDVHSE AYATNPSLNQ VSENYFGAPK 300 HHANQSPFLF ASDLDSQSKH VASSMVKTPP NGSIPNDVPA RQNSLGLWKY FEDDATCLGD 360 NPSSTIPTQT VTNERIFNIT EISPEWAYST ENTKVLVVGN FHEQYRHLNT NVHCVIGDKI 420 VAAETVQSGV YRFMATPHTP GRVNLFLTLD GKTPISEVLS FDYRTMPGSS SDSELSSVED 480 EPNKSKLQMQ MRLARLLFSA NKKKLAPKFL VEGSKVSNLL SASAEKEWMD LLKFITDSKG 540 PYVAATEGLL ELMLRNRLQE WLIEKIVEGH KSTGRDDLGQ GPIHLCSFLG YTWAIRLFSL 600 SGFSLDFRDS SGWTALHWAA YYGREKMVAA LLSAGANPSL VTDPTPGAPG GYTAADLAAR 660 QGYDGLAAYL AEKGLTAHFE AMSLSKDTGR STSRTKSMKQ QTKEFETLSE QELCLKESLA 720 AYRNAADAAS NIQAALRERT LKLQTKAIQL ANPETEAAAI VAAMRIQHAF RNYNRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00435 | DAP | Transfer from AT4G16150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462966280 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957727.1 | 0.0 | calmodulin-binding transcription activator 6 | ||||
Swissprot | Q7XHR2 | 0.0 | CBT_ORYSJ; Calmodulin-binding transcription activator CBT | ||||
TrEMBL | A0A1E5V8U6 | 0.0 | A0A1E5V8U6_9POAL; Calmodulin-binding transcription activator 5 | ||||
STRING | Si028862m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9831 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 1e-176 | calmodulin binding;transcription regulators |