PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462966280
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CAMTA
Protein Properties Length: 776aa    MW: 85632.1 Da    PI: 6.6211
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462966280genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1165.68.4e-52321473117
       CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101
                 e  +rw +++ei+a+L+n++k++++ ++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yYa++e++p+f rrcywl
  462966280  32 AEaASRWFRPNEIYAVLANHAKFQVVPQPIDKPVSGTVVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEEKVHVYYARGEDDPNFFRRCYWL 131
                44489*********************************************************************************************** PP

       CG-1 102 Leeelekivlvhylev 117
                L++ele+ivlvhy+++
  462966280 132 LDKELERIVLVHYRQT 147
                *************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.89127153IPR005559CG-1 DNA-binding domain
SMARTSM010766.6E-6330148IPR005559CG-1 DNA-binding domain
PfamPF038593.3E-4434146IPR005559CG-1 DNA-binding domain
SuperFamilySSF812963.5E-12378464IPR014756Immunoglobulin E-set
PfamPF018331.2E-4379463IPR002909IPT domain
SuperFamilySSF484031.37E-17523674IPR020683Ankyrin repeat-containing domain
CDDcd002045.02E-17542670No hitNo description
Gene3DG3DSA:1.25.40.202.6E-18562710IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.802578682IPR020683Ankyrin repeat-containing domain
PfamPF127961.4E-8584674IPR020683Ankyrin repeat-containing domain
SMARTSM002486.3E-6611640IPR002110Ankyrin repeat
PROSITE profilePS5008811.808611643IPR002110Ankyrin repeat
SMARTSM00248270650679IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MAGGASGRDP LVASEIHGFL TCADLNFEKL MAEAASRWFR PNEIYAVLAN HAKFQVVPQP  60
IDKPVSGTVV LYDRKVVRNF RKDGHNWKKK KDGKTVQEAH EKLKIGNEEK VHVYYARGED  120
DPNFFRRCYW LLDKELERIV LVHYRQTSEE NTIPPPNTEP GVAEMPPINL IHYSSPLTST  180
YSASARTEHS CAAAAAPEEI NSHRGGAISC ESDDPESSLE LFWADLLESS MKNDTSVCGG  240
SLTSNQHAKY GTGDSGNNNF VSTNATNNVI FSSTVDVHSE AYATNPSLNQ VSENYFGAPK  300
HHANQSPFLF ASDLDSQSKH VASSMVKTPP NGSIPNDVPA RQNSLGLWKY FEDDATCLGD  360
NPSSTIPTQT VTNERIFNIT EISPEWAYST ENTKVLVVGN FHEQYRHLNT NVHCVIGDKI  420
VAAETVQSGV YRFMATPHTP GRVNLFLTLD GKTPISEVLS FDYRTMPGSS SDSELSSVED  480
EPNKSKLQMQ MRLARLLFSA NKKKLAPKFL VEGSKVSNLL SASAEKEWMD LLKFITDSKG  540
PYVAATEGLL ELMLRNRLQE WLIEKIVEGH KSTGRDDLGQ GPIHLCSFLG YTWAIRLFSL  600
SGFSLDFRDS SGWTALHWAA YYGREKMVAA LLSAGANPSL VTDPTPGAPG GYTAADLAAR  660
QGYDGLAAYL AEKGLTAHFE AMSLSKDTGR STSRTKSMKQ QTKEFETLSE QELCLKESLA  720
AYRNAADAAS NIQAALRERT LKLQTKAIQL ANPETEAAAI VAAMRIQHAF RNYNRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462966280
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957727.10.0calmodulin-binding transcription activator 6
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLA0A1E5V8U60.0A0A1E5V8U6_9POAL; Calmodulin-binding transcription activator 5
STRINGSi028862m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.11e-176calmodulin binding;transcription regulators