PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462964148 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C2H2 | ||||||||
Protein Properties | Length: 148aa MW: 16372 Da PI: 4.1884 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.2e-05 | 126 | 141 | 1 | 16 |
EEETTTTEEESSHHHH CS zf-C2H2 1 ykCpdCgksFsrksnL 16 ++C+ C+k+F+r n+ 462964148 126 FVCHVCNKTFNRYNNM 141 89********998776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MMSGSTGVMW QSGVDLNIGL PVGGGSGNDE DAAMEEQKDD DDDHRHHHQE EDDMEEEEEE 60 WKHARGGCKA EGDEMERGEV VPVSVEGSSK IVVGEFGPVG AESGAAMGCQ YWIPTPAQIL 120 IGPVQFVCHV CNKTFNRYNN MQWITYRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462964148 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086490 | 2e-36 | BT086490.2 Zea mays full-length cDNA clone ZM_BFc0172G07 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006665114.1 | 2e-39 | PREDICTED: zinc finger protein WIP2-like, partial | ||||
Refseq | XP_025819090.1 | 6e-39 | protein TRANSPARENT TESTA 1-like | ||||
TrEMBL | A0A1E5UZU8 | 2e-38 | A0A1E5UZU8_9POAL; Zinc finger protein WIP5 | ||||
TrEMBL | A0A3L6SR92 | 3e-38 | A0A3L6SR92_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J31116.1.p | 4e-40 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 8e-15 | C2H2 family protein |