PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462952195
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 1062aa    MW: 116951 Da    PI: 7.1245
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462952195genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-182986457
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  462952195 29 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 86
               6789****************************************************97 PP
2Homeobox57.32.6e-18270327457
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  462952195 270 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 327
                6789****************************************************97 PP
3START173.41.4e-544186252204
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi +g  g+++l++++++
  462952195 418 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDVLHVIPTGngGTIELIYMQTY 516
                68999*****************************************************.8888888888******************************* PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+l++s  + ++k+
  462952195 517 APTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRPLYESPKILAQKM 616
                *****999****************************9999999********************************************************* PP

                HHHHTXXXX CS
      START 196 wvatlqrqc 204
                + a+l++ +
  462952195 617 TIAALRHIR 625
                ****99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4352387IPR001356Homeobox domain
SMARTSM003892.6E-152591IPR001356Homeobox domain
SuperFamilySSF466899.41E-172790IPR009057Homeodomain-like
CDDcd000867.27E-162888No hitNo description
PfamPF000466.7E-162986IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-183086IPR009057Homeodomain-like
CDDcd146865.73E-680119No hitNo description
PROSITE profilePS5007115.435264328IPR001356Homeobox domain
SMARTSM003892.6E-15266332IPR001356Homeobox domain
SuperFamilySSF466899.41E-17268331IPR009057Homeodomain-like
CDDcd000867.27E-16269329No hitNo description
PfamPF000466.7E-16270327IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-18271327IPR009057Homeodomain-like
CDDcd146865.73E-6321360No hitNo description
PROSITE profilePS5084827.078408608IPR002913START domain
CDDcd088753.69E-69412628No hitNo description
Gene3DG3DSA:3.30.530.202.1E-24416608IPR023393START-like domain
SMARTSM002342.7E-47417627IPR002913START domain
SuperFamilySSF559616.73E-39418628No hitNo description
PfamPF018522.4E-52418625IPR002913START domain
PfamPF086703.5E-509191061IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 1062 aa     Download sequence    Send to blast
MAAMVAVGGG KDRLSPGSGG APQVDTGKYV RYTPEQVEAL ERVYSECPKP SSLRRQQLIR  60
ECPILSNIEP KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQKQVSR  120
LVYENGYMRQ QLHNPSVATT DTSCESVVTS GQHRQQQNPA APRPQRDANN PAGLLAIAEE  180
TLAEFLSKAT GTAVDWVQMV GMKVAETFKD CPSWYRDCRC VDVLHVIPTG NGGTIELIYM  240
QMAAMVAVGG GKDRLSPGSG GAPQVDTGKY VRYTPEQVEA LERVYSECPK PSSLRRQQLI  300
RECPILSNIE PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVS  360
RLVYENGYMR QQLHNPSVAT TDTSCESVVT SGQHHQQQNP AAPRPQRDAN NPAGLLAIAE  420
ETLAEFLSKA TGTAVDWVQM VGMKPGPDSI GIIAVSHNCS GVAARACGLV SLEPTKVAEI  480
LKDRPSWYRD CRCVDVLHVI PTGNGGTIEL IYMQTYAPTT LAAPRDFWTL RYTSGLEDGS  540
LVICERSLTQ STGGPSGPNT PNFVRAEVLP SGYLIRPCEG GGSMIHIVDH VDLDAWSVPE  600
VLRPLYESPK ILAQKMTIAA LRHIRQIAHE SSGEMPYGGG RQPAVLRTFS QRLSRGFNDA  660
VNGFPDDGWS LMSNDGAEDN VPPALLVRFL REHRSEWADP GVDAYSAAAL RASPYAVPGL  720
RASGFMGSQV ILPLAHTLEH EEFLEVIRLE GHSLCHDEVV LSRDMYLLQL CSGVDENAAG  780
ACAQLVFAPI DESFADDAPL LSSGFRVIPL DAKTWVGTMQ DPPSGTRTLD LASTLEVGSG  840
GTTRASSDAS NASNTRSVLT IAFQFSYENH LRESVAAMAR QYVRTVVASV QRVAMAIAPS  900
RLGGQLEMKQ TPGSPEAQTL ARWIGRSYRF HTGAELLRTE TQCTDSSLKA LWQHSDSIMC  960
CSLKAAPVFT FANQAGLDML ETTLIALQDI SLEKILDDDG RKALCTEYPK IMRQGFAYLP  1020
GGVCVSSMGR PVSYEQAVAW KVLSDDDTPH CLAFMFVNWS FV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462952195
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032840.0AK103284.1 Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464180.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLC5WR860.0C5WR86_SORBI; Uncharacterized protein
STRINGSb01g013710.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]