PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462952060

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

TALE

Protein Properties

Length: 333aa MW: 37095.5 Da PI: 8.8335

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462952060	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34	4.9e-11	218	254	20	54
HH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 20 ek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 + ++yps e+++ LA+++gLt++qV++WF N R + 462952060 218 DNflHPYPSDEDKQMLATRTGLTQNQVSNWFGNARGR 254 43559*****************************966 PP
2	BELL	67.5	2.5e-22	95	169	3	72
BELL 3 qelqkkkakLlslle.....eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e +++ka Ll++++ eV++r +q ++q+q+v+ssFe v gl sa+pY+s lk +S+ Fr L+++i+++i 462952060 95 PEFRERKANLLHMQQeclgmEVHERCNQHCQQMQMVVSSFESVPGLSSATPYASSVLKDVSKRFRRLRTMISKKI 169 58899******994444459************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	5.2E-23	39	167	IPR006563	POX domain
Pfam	PF07526	4.6E-26	44	166	IPR006563	POX domain
PROSITE profile	PS50071	12.422	195	258	IPR001356	Homeobox domain
CDD	cd00086	9.47E-13	197	259	No hit	No description
SMART	SM00389	1.3E-11	197	262	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.15E-17	200	269	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-27	201	264	IPR009057	Homeodomain-like
Pfam	PF05920	2.8E-17	215	254	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MLPLPPRRLQ GPRTKLDRFT TEQQAALALT LSPAYEGSLQ SIVVLSGSRF LKPAQQLLDD 60 ICAALLPPEA AAVKGPSSVD VHLAASAGHH EHRRPEFRER KANLLHMQQE CLGMEVHERC 120 NQHCQQMQMV VSSFESVPGL SSATPYASSV LKDVSKRFRR LRTMISKKIQ YVSRLLEEEL 180 TSLPEGCSSG GKALAVWKPR KGHHPERAVS VLRAWFFDNF LHPYPSDEDK QMLATRTGLT 240 QNQVSNWFGN ARGRLWKPMV DEMHMLETLS SSSCSTPSLD GQVHQQMLEH HAAPPSVGVD 300 EVQPGMMVPL GRMSLTLGLQ HHRQQQFGGH LVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-15	202	262	3	63	Homeobox protein Meis2
3k2a_B	2e-15	202	262	3	63	Homeobox protein Meis2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462952060

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN672670	1e-161	JN672670.1 Eragrostis tef bio-material GRIN PI524434 clone Tefdw3b, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009382787.1	3e-64	PREDICTED: BEL1-like homeodomain protein 9
TrEMBL	J9QGM8	0.0	J9QGM8_ERATE; Uncharacterized protein
STRING	XP_010689104.1	1e-61	(Beta vulgaris)
STRING	GSMUA_Achr10P06670_001	7e-61	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16049	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	1e-51	BEL1-like homeodomain 8

Publications ? help Back to Top
Zhu Q, et al. High-throughput discovery of mutations in tef semi-dwarfing genes by next-generation sequencing analysis. Genetics, 2012. 192(3): p. 819-29 [PMID:22904035]