PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462952060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 333aa MW: 37095.5 Da PI: 8.8335 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 34 | 4.9e-11 | 218 | 254 | 20 | 54 |
HH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 20 ek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 + ++yps e+++ LA+++gLt++qV++WF N R + 462952060 218 DNflHPYPSDEDKQMLATRTGLTQNQVSNWFGNARGR 254 43559*****************************966 PP | |||||||
2 | BELL | 67.5 | 2.5e-22 | 95 | 169 | 3 | 72 |
BELL 3 qelqkkkakLlslle.....eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e +++ka Ll++++ eV++r +q ++q+q+v+ssFe v gl sa+pY+s lk +S+ Fr L+++i+++i 462952060 95 PEFRERKANLLHMQQeclgmEVHERCNQHCQQMQMVVSSFESVPGLSSATPYASSVLKDVSKRFRRLRTMISKKI 169 58899********994444459**************************************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.2E-23 | 39 | 167 | IPR006563 | POX domain |
Pfam | PF07526 | 4.6E-26 | 44 | 166 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.422 | 195 | 258 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.47E-13 | 197 | 259 | No hit | No description |
SMART | SM00389 | 1.3E-11 | 197 | 262 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.15E-17 | 200 | 269 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-27 | 201 | 264 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.8E-17 | 215 | 254 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 333 aa Download sequence Send to blast |
MLPLPPRRLQ GPRTKLDRFT TEQQAALALT LSPAYEGSLQ SIVVLSGSRF LKPAQQLLDD 60 ICAALLPPEA AAVKGPSSVD VHLAASAGHH EHRRPEFRER KANLLHMQQE CLGMEVHERC 120 NQHCQQMQMV VSSFESVPGL SSATPYASSV LKDVSKRFRR LRTMISKKIQ YVSRLLEEEL 180 TSLPEGCSSG GKALAVWKPR KGHHPERAVS VLRAWFFDNF LHPYPSDEDK QMLATRTGLT 240 QNQVSNWFGN ARGRLWKPMV DEMHMLETLS SSSCSTPSLD GQVHQQMLEH HAAPPSVGVD 300 EVQPGMMVPL GRMSLTLGLQ HHRQQQFGGH LVG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-15 | 202 | 262 | 3 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-15 | 202 | 262 | 3 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462952060 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JN672670 | 1e-161 | JN672670.1 Eragrostis tef bio-material GRIN PI524434 clone Tefdw3b, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009382787.1 | 3e-64 | PREDICTED: BEL1-like homeodomain protein 9 | ||||
TrEMBL | J9QGM8 | 0.0 | J9QGM8_ERATE; Uncharacterized protein | ||||
STRING | XP_010689104.1 | 1e-61 | (Beta vulgaris) | ||||
STRING | GSMUA_Achr10P06670_001 | 7e-61 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16049 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G27990.1 | 1e-51 | BEL1-like homeodomain 8 |
Publications ? help Back to Top | |||
---|---|---|---|
|